RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PPP1R14DQ9NXH3 145 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 SH3BGRL2Q9UJC5 107 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 OAZ3Q9UMX2 235 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 PCDHB10Q9UN67 800 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TIMM22Q9Y584 194 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CLCA3PQ9Y6N3 262 aa7.48□□□□□ -1.21
VPS13D-211ENST00000543710 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-211ENST00000543710 CXorf51AA0A1B0GTR3 108 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RFXAPO00287 272 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ARNTLO00327 626 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 HOXC13P31276 330 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 IST1P53990 364 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PRPS1P60891 318 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TSPAN5P62079 268 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ZXDAP98168 799 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MEF2DQ14814 521 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UGT3A2Q3SY77 523 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PITRM1Q5JRX3 1037 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GARNL3Q5VVW2 1013 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CPZQ66K79 652 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TMEM211Q6ICI0 200 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 KDELC1Q6UW63 502 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF627Q7L945 461 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 S100A7AQ86SG5 101 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TICAM1Q8IUC6 712 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ASCC1Q8N9N2 400 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 OR10T2Q8NGX3 314 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NKD1Q969G9 470 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RIOK2Q9BVS4 552 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 POTEKPQ9BYX7 375 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NANSQ9NR45 359 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CLEC1BQ9P126 229 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ADAM29Q9UKF5 820 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 FCF1Q9Y324 198 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RNF225M0QZC1 329 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MMP20O60882 483 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CRYABP02511 175 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 LPLP06858 475 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 H2AFB2P0C5Z0 115 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 C1GALT1C1LP0DN25 315 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CHRM1P11229 460 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ADH6P28332 368 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RPS5P46782 204 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 AFF1P51825 1210 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PPP5CP53041 499 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PRRT3Q5FWE3 981 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 C3orf38Q5JPI3 329 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SLC6A19Q695T7 634 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PGBD2Q6P3X8 592 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UGT2A3Q6UWM9 527 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NCCRP1Q6ZVX7 275 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GALNT12Q8IXK2 581 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PQLC3Q8N755 202 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF676Q8N7Q3 588 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ISG20Q96AZ6 181 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PTCHD1Q96NR3 888 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 EBPLQ9BY08 206 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 XPNPEP1Q9NQW7 623 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TAS2R9Q9NYW1 312 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 LAMP5Q9UJQ1 280 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SALL4Q9UJQ4 1053 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CCDC187A0A096LP49 1063 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 C5orf51A6NDU8 294 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ANKRD66B4E2M5 251 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ZNF821O75541 412 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PRH1P02810 166 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UCHL1P09936 223 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UBBP0CG47 229 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UBCP0CG48 685 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MYCLP1P12525 358 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 HNRNPA2B1P22626 353 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UQCRC1P31930 480 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 VASPP50552 380 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MTPNP58546 118 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RAB5BP61020 215 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 RPS27AP62979 156 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UBA52P62987 128 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NFATC2Q13469 925 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 LRRC66Q68CR7 880 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PSAPL1Q6NUJ1 521 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 UBE2Q1Q7Z7E8 422 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CNTN4Q8IWV2 1026 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SLC39A11Q8N1S5 342 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SPATA6LQ8N4H0 392 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 OR52N2Q8NGI0 321 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 GPR151Q8TDV0 419 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SIGLEC10Q96LC7 697 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PWWP2AQ96N64 755 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CASD1Q96PB1 797 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 SERINC2Q96SA4 455 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 URM1Q9BTM9 101 aaKnown RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 ACAT2Q9BWD1 397 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 TMEM121BQ9BXQ6 578 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-211ENST00000543710 OR51I1Q9H343 314 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 LRP5LA4QPB2 252 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 PNMTP11086 282 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 NCK1P16333 377 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 MAP2K3P46734 347 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 CLRN1P58418 232 aa7.47□□□□□ -1.21
VPS13D-211ENST00000543710 HERV-K104P61576 105 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms