RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF699Q32M78 642 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 TMEM41BQ5BJD5 291 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 ARHGAP11AQ6P4F7 1023 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 PPP1R42Q7Z4L9 355 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 GOLGA7Q7Z5G4 137 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 GPR142Q7Z601 462 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 TBC1D10CQ8IV04 446 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 TBC1D21Q8IYX1 336 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 OR10G7Q8NGN6 311 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 WDR36Q8NI36 951 aaKnown RBP6.22□□□□□ -1.41
NUP54-215ENST00000514313 THRSPQ92748 146 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 SLCO2A1Q92959 643 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 RBM18Q96H35 190 aaKnown RBP6.22□□□□□ -1.41
NUP54-215ENST00000514313 CAPNS2Q96L46 248 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 LITAFQ99732 161 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 WRAP53Q9BUR4 548 aaKnown RBP6.22□□□□□ -1.41
NUP54-215ENST00000514313 ZNF696Q9H7X3 374 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 FGF22Q9HCT0 170 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 STARD5Q9NSY2 213 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 IQCMA0A1B0GVH7 501 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 RNF222A6NCQ9 220 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 KRTAP29-1A8MX34 341 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 NEDD8-MDP1E9PL57 170 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 ZFAND5O76080 213 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 STK17BO94768 372 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 PCCBP05166 539 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 CD1DP15813 335 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 SOX6P35712 828 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 SGSHP51688 502 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 CRYBA2P53672 197 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 RPS27AP62979 156 aaKnown RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 ZNF177Q13360 481 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 NFATC2Q13469 925 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 KIAA0141Q14154 515 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 ACSF3Q4G176 576 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 TCHHL1Q5QJ38 904 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 WLSQ5T9L3 541 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 KCNMB4Q86W47 210 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 GPBP1Q86WP2 473 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 ARFGAP2Q8N6H7 521 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 ICA1LQ8NDH6 482 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 OR4F5Q8NH21 305 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 ALKBH3Q96Q83 286 aaPredicted RBP6.21□□□□□ -1.42
NUP54-215ENST00000514313 TPPP3Q9BW30 176 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 RIBC2Q9H4K1 309 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 PALMDQ9NP74 551 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 ZNF580Q9UK33 172 aa6.21□□□□□ -1.42
NUP54-215ENST00000514313 ZNF749O43361 778 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 NDUFA7O95182 113 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 PPP2R1AP30153 589 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 IFNAR2P48551 515 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 ARFIP1P53367 373 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 KNOP1Q1ED39 458 aaKnown RBP6.2□□□□□ -1.42
NUP54-215ENST00000514313 USH1GQ495M9 461 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 BSPRYQ5W0U4 402 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 LCLAT1Q6UWP7 414 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 C3P1Q6ZMU1 363 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 PAQR9Q6ZVX9 377 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 GCNT2Q8N0V5 402 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 PYROXD2Q8N2H3 581 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 FADS6Q8N9I5 356 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 OR52B6Q8NGF0 335 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 OR1K1Q8NGR3 316 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 C11orf52Q96A22 123 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 FBXO17Q96EF6 278 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 RAB11FIP5Q9BXF6 653 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 DCTPP1Q9H773 170 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.2□□□□□ -1.42
NUP54-215ENST00000514313 RNF115Q9Y4L5 304 aa6.2□□□□□ -1.42
NUP54-215ENST00000514313 IGHV3-38A0A0C4DH36 116 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 H3BMH7 237 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 DUSP11O75319 330 aaKnown RBP6.19□□□□□ -1.42
NUP54-215ENST00000514313 DUS4LO95620 317 aaKnown RBP6.19□□□□□ -1.42
NUP54-215ENST00000514313 SP1P08047 785 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 FAM200BP0CF97 657 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 EPB41P11171 864 aaKnown RBP6.19□□□□□ -1.42
NUP54-215ENST00000514313 ZNF26P17031 533 aaPredicted RBP6.19□□□□□ -1.42
NUP54-215ENST00000514313 TNNI3P19429 210 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 PTGFRP43088 359 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 TMEM187Q14656 261 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 HAGHQ16775 308 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 UPP1Q16831 310 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 ECSCRQ19T08 205 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 ZFP69Q49AA0 526 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 RUSC1-AS1Q66K80 236 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 GRAMD2AQ8IUY3 354 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 CENPLQ8N0S6 344 aaPredicted RBP6.19□□□□□ -1.42
NUP54-215ENST00000514313 ATXN7L3BQ96GX2 97 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 TNFRSF13CQ96RJ3 184 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 TXN2Q99757 166 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 GPA33Q99795 319 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 ERP44Q9BS26 406 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 MRPL13Q9BYD1 178 aaKnown RBP6.19□□□□□ -1.42
NUP54-215ENST00000514313 LRRCC1Q9C099 1032 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 GDAP2Q9NXN4 497 aa6.19□□□□□ -1.42
NUP54-215ENST00000514313 PRSS44E7EML9 344 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 E9PMD0 336 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 SGK494L7N484 410 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 NR5A2O00482 541 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms