RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 DGLUCYQ7Z3D6 616 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 OR2L8Q8NGY9 312 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 SLC7A13Q8TCU3 470 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 MS4A6EQ96DS6 147 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 CHCHD6Q9BRQ6 235 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 TRMT61BQ9BVS5 477 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 CLN6Q9NWW5 311 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 DNAJC27Q9NZQ0 273 aa17.35■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3DA0A087WVF3 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3IA0A087WXS9 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3EA0A087X179 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3KA0A087X1G2 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3FA6NER0 549 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3LB9A6J9 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 ZW10O43264 779 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 NARSO43776 548 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3HP0C7X1 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 CERS1P27544 350 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 PEBP1P30086 187 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3GQ6DHY5 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3CQ6IPX1 549 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 TBC1D3Q8IZP1 549 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 ACOT4Q8N9L9 421 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 FCRL4Q96PJ5 515 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 CENPOQ9BU64 300 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 C1QTNF2Q9BXJ5 285 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 PITHD1Q9GZP4 211 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 DSN1Q9H410 356 aa17.34■□□□□ 0.37
SHKBP1-201ENST00000291842 F5P12259 2224 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 GPR89AB7ZAQ6 455 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 K7EQS6 105 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 TLR4O00206 839 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 RNGTTO60942 597 aaKnown RBP17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 GPR89BP0CG08 455 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 OSMP13725 252 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 RGS6P49758 472 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 ENPP2Q13822 863 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 LRRC32Q14392 662 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 AGERQ15109 404 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 TOR1AIP1Q5JTV8 583 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 ZNF776Q68DI1 518 aaPredicted RBP17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 MEX3DQ86XN8 651 aaKnown RBP17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 IQCF1Q8N6M8 205 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 FAM46DQ8NEK8 389 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 OR2L3Q8NG85 312 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 PSMA8Q8TAA3 256 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 CNRIP1Q96F85 164 aaPredicted RBP17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 C16orf58Q96GQ5 468 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 PBX4Q9BYU1 374 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 C6orf62Q9GZU0 229 aaPredicted RBP17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 TAS2R7Q9NYW3 318 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 KCNE3Q9Y6H6 103 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 SCN3AQ9NY46 2000 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 DSPPQ9NZW4 1301 aa17.33■□□□□ 0.37
SHKBP1-201ENST00000291842 TRBV23OR9-2A0A075B6M9 112 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 ARRDC5A6NEK1 342 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 SERPINB7O75635 380 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 ADAP00813 363 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 HMGN2P05204 90 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 DRD2P14416 443 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 DDX5P17844 614 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 TNNI3P19429 210 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 HIST1H1TP22492 207 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 NTSP30990 170 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 DNASE1L3Q13609 305 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 RPE65Q16518 533 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 ITPRIPL2Q3MIP1 535 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 PGBD2Q6P3X8 592 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 TMEM107Q6UX40 140 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 LSRQ86X29 649 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 WDR36Q8NI36 951 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 TIMM29Q9BSF4 260 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 PRR14Q9BWN1 585 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 FAIM2Q9BWQ8 316 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 FGF22Q9HCT0 170 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 EQTNQ9NQ60 294 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 PRDM7Q9NQW5 492 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 POLE4Q9NR33 117 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 ENOPH1Q9UHY7 261 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 A4GNTQ9UNA3 340 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 CA5BQ9Y2D0 317 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 IFT52Q9Y366 437 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 ASB4Q9Y574 426 aa17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 GPC6Q9Y625 555 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 MDC1Q14676 2089 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-201ENST00000291842 EPOPA6NHQ4 379 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 CNOT3O75175 753 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 EML2O95834 649 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 RPLP0P05388 317 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 CHRM4P08173 479 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 BCAP31P51572 246 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 CLDN2P57739 230 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 RPS3AP61247 264 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 FUT5Q11128 374 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 IRF3Q14653 427 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 ZIC1Q15915 447 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 ABHD17CQ6PCB6 329 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 NUDT18Q6ZVK8 323 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 RD3Q7Z3Z2 195 aa17.32■□□□□ 0.36
SHKBP1-201ENST00000291842 TBC1D19Q8N5T2 526 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms