RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-222ENST00000561431 TMEM164Q5U3C3 297 aa6.96□□□□□ -1.3
LRRC28-222ENST00000561431 STK32AQ8WU08 396 aa6.96□□□□□ -1.3
LRRC28-222ENST00000561431 HINFPQ9BQA5 517 aa6.96□□□□□ -1.3
LRRC28-222ENST00000561431 RAB6BQ9NRW1 208 aa6.96□□□□□ -1.3
LRRC28-222ENST00000561431 ATXN7L1Q9ULK2 861 aaPredicted RBP6.96□□□□□ -1.3
LRRC28-222ENST00000561431 EPXP11678 715 aa6.95□□□□□ -1.3
LRRC28-222ENST00000561431 SEC13P55735 322 aa6.95□□□□□ -1.3
LRRC28-222ENST00000561431 LBRQ14739 615 aaKnown RBP6.95□□□□□ -1.3
LRRC28-222ENST00000561431 B4GALNT3Q6L9W6 998 aa6.95□□□□□ -1.3
LRRC28-222ENST00000561431 ABHD17AQ96GS6 310 aa6.95□□□□□ -1.3
LRRC28-222ENST00000561431 RUBCNLQ9H714 662 aa6.95□□□□□ -1.3
LRRC28-222ENST00000561431 SHROOM4Q9ULL8 1493 aa6.95□□□□□ -1.3
LRRC28-222ENST00000561431 FGFR3P22607 806 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 CTBSQ01459 385 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 CNKSR1Q969H4 720 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 ESYT1Q9BSJ8 1104 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 NDFIP2Q9NV92 336 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 NOP53Q9NZM5 478 aaKnown RBP6.94□□□□□ -1.3
LRRC28-222ENST00000561431 ZMIZ1Q9ULJ6 1067 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 PCDHGA11Q9Y5H2 935 aa6.94□□□□□ -1.3
LRRC28-222ENST00000561431 SFI1A8K8P3 1242 aa6.93□□□□□ -1.3
LRRC28-222ENST00000561431 BNIP3LO60238 219 aa6.93□□□□□ -1.3
LRRC28-222ENST00000561431 IL2RAP01589 272 aa6.93□□□□□ -1.3
LRRC28-222ENST00000561431 CENPCQ03188 943 aa6.93□□□□□ -1.3
LRRC28-222ENST00000561431 FOXD4L6Q3SYB3 417 aaPredicted RBP6.93□□□□□ -1.3
LRRC28-222ENST00000561431 FOXD4L3Q6VB84 417 aaPredicted RBP6.93□□□□□ -1.3
LRRC28-222ENST00000561431 KIAA1024Q9UPX6 916 aa6.93□□□□□ -1.3
LRRC28-222ENST00000561431 HRH3Q9Y5N1 445 aa6.93□□□□□ -1.3
LRRC28-222ENST00000561431 ZBTB7BO15156 539 aaPredicted RBP6.92□□□□□ -1.3
LRRC28-222ENST00000561431 TRIM26Q12899 539 aaPredicted RBP6.92□□□□□ -1.3
LRRC28-222ENST00000561431 SIX5Q8N196 739 aa6.92□□□□□ -1.3
LRRC28-222ENST00000561431 TTBK1Q5TCY1 1321 aaPredicted RBP6.92□□□□□ -1.3
LRRC28-222ENST00000561431 TMEM88BA6NKF7 163 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 PATL2C9JE40 543 aaKnown RBP6.91□□□□□ -1.3
LRRC28-222ENST00000561431 BACH1O14867 736 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 BRD1O95696 1058 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 GNRH1P01148 92 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 ARAFP10398 606 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 MSX1P28360 303 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 C4orf17Q53FE4 359 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 ESCO1Q5FWF5 840 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 PGBD3Q8N328 593 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.91□□□□□ -1.3
LRRC28-222ENST00000561431 ZSCAN10Q96SZ4 725 aaPredicted RBP6.91□□□□□ -1.3
LRRC28-222ENST00000561431 SERTAD1Q9UHV2 236 aa6.91□□□□□ -1.3
LRRC28-222ENST00000561431 NEURL1BA8MQ27 555 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 PRMT3O60678 531 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 LGR5O75473 907 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 GDF10P55107 478 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 SWI5Q1ZZU3 235 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 RSPO4Q2I0M5 234 aaPredicted RBP6.9□□□□□ -1.3
LRRC28-222ENST00000561431 EFHC2Q5JST6 749 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 CHSY3Q70JA7 882 aa6.9□□□□□ -1.3
LRRC28-222ENST00000561431 FHDC1Q9C0D6 1143 aaPredicted RBP6.9□□□□□ -1.3
LRRC28-222ENST00000561431 ATP2B4P23634 1241 aa6.89□□□□□ -1.31
LRRC28-222ENST00000561431 GATA4P43694 442 aa6.89□□□□□ -1.31
LRRC28-222ENST00000561431 GNASQ5JWF2 1037 aa6.89□□□□□ -1.31
LRRC28-222ENST00000561431 TSEN2Q8NCE0 465 aaKnown RBP6.89□□□□□ -1.31
LRRC28-222ENST00000561431 PODXL2Q9NZ53 605 aa6.89□□□□□ -1.31
LRRC28-222ENST00000561431 SCO2A0A1W2PP80 73 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 STAU1O95793 577 aaKnown RBP6.88□□□□□ -1.31
LRRC28-222ENST00000561431 NKAPLQ5M9Q1 402 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 TMEM214Q6NUQ4 689 aaKnown RBP6.88□□□□□ -1.31
LRRC28-222ENST00000561431 TRIM11Q96F44 468 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 XAGE2Q96GT9 111 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 PRIMPOLQ96LW4 560 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 CRISPLD1Q9H336 500 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 ZNF358Q9NW07 568 aa6.88□□□□□ -1.31
LRRC28-222ENST00000561431 INHAP05111 366 aa6.87□□□□□ -1.31
LRRC28-222ENST00000561431 GTF2E1P29083 439 aaPredicted RBP6.87□□□□□ -1.31
LRRC28-222ENST00000561431 KCNA1Q09470 495 aa6.87□□□□□ -1.31
LRRC28-222ENST00000561431 CLP1Q92989 425 aaKnown RBP6.87□□□□□ -1.31
LRRC28-222ENST00000561431 VTI1AQ96AJ9 217 aa6.87□□□□□ -1.31
LRRC28-222ENST00000561431 KLF15Q9UIH9 416 aa6.87□□□□□ -1.31
LRRC28-222ENST00000561431 MTMR7Q9Y216 660 aa6.87□□□□□ -1.31
LRRC28-222ENST00000561431 FCHSD1Q86WN1 690 aa6.86□□□□□ -1.31
LRRC28-222ENST00000561431 TNS4Q8IZW8 715 aa6.86□□□□□ -1.31
LRRC28-222ENST00000561431 CHMP7Q8WUX9 453 aaPredicted RBP6.86□□□□□ -1.31
LRRC28-222ENST00000561431 KRTAP9-9Q9BYP9 154 aa6.86□□□□□ -1.31
LRRC28-222ENST00000561431 KRTAP9-4Q9BYQ2 154 aa6.86□□□□□ -1.31
LRRC28-222ENST00000561431 ETNK1Q9HBU6 452 aa6.86□□□□□ -1.31
LRRC28-222ENST00000561431 HCN2Q9UL51 889 aa6.86□□□□□ -1.31
LRRC28-222ENST00000561431 TMEM229AB2RXF0 380 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 SPATA31C1P0DKV0 1188 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 SCNN1DP51172 638 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 FAM69CQ0P6D2 419 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 TLR1Q15399 786 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 ARTNQ5T4W7 220 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 CCER1Q8TC90 406 aaPredicted RBP6.85□□□□□ -1.31
LRRC28-222ENST00000561431 PLVAPQ9BX97 442 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 GZF1Q9H116 711 aaPredicted RBP6.85□□□□□ -1.31
LRRC28-222ENST00000561431 CHMP3Q9Y3E7 222 aa6.85□□□□□ -1.31
LRRC28-222ENST00000561431 M0R2N6 131 aa6.84□□□□□ -1.31
LRRC28-222ENST00000561431 DKK1O94907 266 aa6.84□□□□□ -1.31
LRRC28-222ENST00000561431 ADH6P28332 368 aa6.84□□□□□ -1.31
LRRC28-222ENST00000561431 FIGNL1Q6PIW4 674 aa6.84□□□□□ -1.31
LRRC28-222ENST00000561431 RHBDD1Q8TEB9 315 aa6.84□□□□□ -1.31
LRRC28-222ENST00000561431 SCG3Q8WXD2 468 aaKnown RBP6.84□□□□□ -1.31
LRRC28-222ENST00000561431 ZCCHC2Q9C0B9 1178 aaKnown RBP6.84□□□□□ -1.31
LRRC28-222ENST00000561431 ZFP64Q9NPA5 681 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms