RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PPP1R12BO60237 982 aaPredicted RBP4.89□□□□□ -1.63
TRAV28-201ENST00000557548 MAN1A2O60476 641 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 INHAP05111 366 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 FSHRP23945 695 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 VARSP26640 1264 aaKnown RBP4.89□□□□□ -1.63
TRAV28-201ENST00000557548 SKOR1P84550 965 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 FMR1Q06787 632 aaKnown RBP eCLIP4.89□□□□□ -1.63
TRAV28-201ENST00000557548 AAMPQ13685 434 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 MRPL58Q14197 206 aaKnown RBP4.89□□□□□ -1.63
TRAV28-201ENST00000557548 ARID5BQ14865 1188 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 DRC1Q96MC2 740 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 ENAMQ9NRM1 1142 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 CCDC87Q9NVE4 849 aa4.89□□□□□ -1.63
TRAV28-201ENST00000557548 SCO2A0A1W2PP80 73 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 TNFRSF10BO14763 440 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 ERCC5P28715 1186 aaPredicted RBP4.88□□□□□ -1.63
TRAV28-201ENST00000557548 MAPK8P45983 427 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 EIF1AXP47813 144 aaKnown RBP4.88□□□□□ -1.63
TRAV28-201ENST00000557548 NAALADL2Q58DX5 795 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 RNFT1Q5M7Z0 435 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 C9orf131Q5VYM1 1079 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 SLC9A9Q8IVB4 645 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 ZNF784Q8NCA9 323 aaPredicted RBP4.88□□□□□ -1.63
TRAV28-201ENST00000557548 FAM161BQ96MY7 647 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 WASF2Q9Y6W5 498 aa4.88□□□□□ -1.63
TRAV28-201ENST00000557548 SCAMP3O14828 347 aaKnown RBP4.87□□□□□ -1.63
TRAV28-201ENST00000557548 FZD6O60353 706 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 LDHBP07195 334 aaKnown RBP4.87□□□□□ -1.63
TRAV28-201ENST00000557548 HDLBPQ00341 1268 aaKnown RBP4.87□□□□□ -1.63
TRAV28-201ENST00000557548 DSC3Q14574 896 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 COX20Q5RI15 118 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 CYP2U1Q7Z449 544 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 PODNQ7Z5L7 613 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 EHBP1Q8NDI1 1231 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.87□□□□□ -1.63
TRAV28-201ENST00000557548 RAB6BQ9NRW1 208 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 RNF19AQ9NV58 838 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 SCHIP1Q9P0W5 487 aaPredicted RBP4.87□□□□□ -1.63
TRAV28-201ENST00000557548 STIM2Q9P246 746 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 PPP1R1BQ9UD71 204 aaPredicted RBP4.87□□□□□ -1.63
TRAV28-201ENST00000557548 CNTNAP5Q8WYK1 1306 aa4.87□□□□□ -1.63
TRAV28-201ENST00000557548 A6NJY4 79 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 GPR182O15218 404 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 WNT7BP56706 349 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 XPCQ01831 940 aaPredicted RBP4.86□□□□□ -1.63
TRAV28-201ENST00000557548 DHX9Q08211 1270 aaKnown RBP4.86□□□□□ -1.63
TRAV28-201ENST00000557548 EHHADHQ08426 723 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 ALKBH2Q6NS38 261 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 NBPF11Q86T75 865 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 DMRTB1Q96MA1 342 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 SLC4A9Q96Q91 983 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 CITED4Q96RK1 184 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 DUSP9Q99956 384 aaKnown RBP4.86□□□□□ -1.63
TRAV28-201ENST00000557548 C2orf49Q9BVC5 232 aaPredicted RBP4.86□□□□□ -1.63
TRAV28-201ENST00000557548 QTRT2Q9H974 415 aaKnown RBP4.86□□□□□ -1.63
TRAV28-201ENST00000557548 MRS2Q9HD23 443 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 PARP2Q9UGN5 583 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 TLL2Q9Y6L7 1015 aa4.86□□□□□ -1.63
TRAV28-201ENST00000557548 LILRA1O75019 489 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 PRPF40AO75400 957 aaKnown RBP4.85□□□□□ -1.63
TRAV28-201ENST00000557548 GNRH1P01148 92 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 IGHA2P01877 340 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 ITGB7P26010 798 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 PLCB3Q01970 1234 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 ESCO1Q5FWF5 840 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 FAM26DQ5JW98 314 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 LDLRAD1Q5T700 205 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 ATCAYQ86WG3 371 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 FAM177A1Q8N128 213 aaPredicted RBP4.85□□□□□ -1.63
TRAV28-201ENST00000557548 CDK15Q96Q40 435 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 SETDB2Q96T68 719 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 FAM129BQ96TA1 746 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 ARHGEF10LQ9HCE6 1279 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 ZFP64Q9NPA5 681 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 WWC3Q9ULE0 1092 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 LRFN2Q9ULH4 789 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 USP3Q9Y6I4 520 aa4.85□□□□□ -1.63
TRAV28-201ENST00000557548 ZBTB39O15060 712 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 GRM5P41594 1212 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 SMTNP53814 917 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 PSMA6P60900 246 aaKnown RBP4.84□□□□□ -1.63
TRAV28-201ENST00000557548 ATP2B2Q01814 1243 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 PSMD2Q13200 908 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 SF3A1Q15459 793 aaKnown RBP4.84□□□□□ -1.63
TRAV28-201ENST00000557548 PPP1R26Q5T8A7 1209 aaPredicted RBP4.84□□□□□ -1.63
TRAV28-201ENST00000557548 LYPD4Q6UWN0 246 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 CCDC116Q8IYX3 515 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 STAG2Q8N3U4 1231 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 ABTB2Q8N961 1025 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 TMEM87AQ8NBN3 555 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 NANOS1Q8WY41 292 aaKnown RBP4.84□□□□□ -1.63
TRAV28-201ENST00000557548 TRIM52Q96A61 297 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 NGLY1Q96IV0 654 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 VTI1BQ9UEU0 232 aa4.84□□□□□ -1.63
TRAV28-201ENST00000557548 SORBS3O60504 671 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 IL2RAP01589 272 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 FGD1P98174 961 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 RAD51AP2Q09MP3 1159 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 PDE3BQ13370 1112 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms