RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 FAM98CQ17RN3 349 aaKnown RBP8.06□□□□□ -1.12
SF3A3-208ENST00000489537 PLEKHO1Q53GL0 409 aaPredicted RBP8.06□□□□□ -1.12
SF3A3-208ENST00000489537 PAXIP1Q6ZW49 1069 aaPredicted RBP8.06□□□□□ -1.12
SF3A3-208ENST00000489537 PHACTR3Q96KR7 559 aa8.06□□□□□ -1.12
SF3A3-208ENST00000489537 EYA1Q99502 592 aa8.06□□□□□ -1.12
SF3A3-208ENST00000489537 TSHZ2Q9NRE2 1034 aa8.06□□□□□ -1.12
SF3A3-208ENST00000489537 PHRF1Q9P1Y6 1649 aaKnown RBP8.06□□□□□ -1.12
SF3A3-208ENST00000489537 PTPRCP08575 1304 aa8.05□□□□□ -1.12
SF3A3-208ENST00000489537 SLIT3O75094 1523 aa8.05□□□□□ -1.12
SF3A3-208ENST00000489537 BHMG1C9JSJ3 638 aaPredicted RBP8.05□□□□□ -1.12
SF3A3-208ENST00000489537 HOXB7P09629 217 aa8.05□□□□□ -1.12
SF3A3-208ENST00000489537 ZC3H6P61129 1189 aaKnown RBP8.05□□□□□ -1.12
SF3A3-208ENST00000489537 TWISTNBQ3B726 338 aaPredicted RBP8.05□□□□□ -1.12
SF3A3-208ENST00000489537 ARHGEF25Q86VW2 580 aa8.05□□□□□ -1.12
SF3A3-208ENST00000489537 WNT2BQ93097 391 aa8.05□□□□□ -1.12
SF3A3-208ENST00000489537 CAMTA1Q9Y6Y1 1673 aa8.05□□□□□ -1.12
SF3A3-208ENST00000489537 SPATA31A5Q5VU36 1347 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 SPATA31A7Q8IWB4 1347 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 OVOS2A0A0G2JMS6 1433 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 NCAPD2Q15021 1401 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 VAMP4O75379 141 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 SSH1Q8WYL5 1049 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 TSR2Q969E8 191 aaKnown RBP8.04□□□□□ -1.12
SF3A3-208ENST00000489537 MBIPQ9NS73 344 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 RABGEF1Q9UJ41 708 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 HDAC5Q9UQL6 1122 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 CCDC9Q9Y3X0 531 aaKnown RBP8.04□□□□□ -1.12
SF3A3-208ENST00000489537 LAS1LQ9Y4W2 734 aaKnown RBP8.04□□□□□ -1.12
SF3A3-208ENST00000489537 THSD7AQ9UPZ6 1657 aa8.04□□□□□ -1.12
SF3A3-208ENST00000489537 COL14A1Q05707 1796 aaKnown RBP8.04□□□□□ -1.12
SF3A3-208ENST00000489537 NFAT5O94916 1531 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 RGPD1P0DJD0 1748 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 MAP3K5Q99683 1374 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 HSP90AB1P08238 724 aaKnown RBP8.03□□□□□ -1.12
SF3A3-208ENST00000489537 C1orf141Q5JVX7 400 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 KRT27Q7Z3Y8 459 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 STK31Q9BXU1 1019 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 KDM2BQ8NHM5 1336 aa8.03□□□□□ -1.12
SF3A3-208ENST00000489537 LMO7Q8WWI1 1683 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 CPDO75976 1380 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 SPDYE16A6NNV3 312 aaPredicted RBP8.02□□□□□ -1.13
SF3A3-208ENST00000489537 TRIM27P14373 513 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 FBLN1P23142 703 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 ANP32AP39687 249 aaKnown RBP8.02□□□□□ -1.13
SF3A3-208ENST00000489537 HDAC1Q13547 482 aaPredicted RBP8.02□□□□□ -1.13
SF3A3-208ENST00000489537 TAF7Q15545 349 aaPredicted RBP8.02□□□□□ -1.13
SF3A3-208ENST00000489537 E2F4Q16254 413 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 AKAP4Q5JQC9 854 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 C20orf194Q5TEA3 1177 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 CCDC30Q5VVM6 783 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 LARP1Q6PKG0 1096 aaKnown RBP8.02□□□□□ -1.13
SF3A3-208ENST00000489537 THSD4Q6ZMP0 1018 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 PRDM11Q9NQV5 511 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 SPATA31A1Q5TZJ5 1347 aa8.02□□□□□ -1.13
SF3A3-208ENST00000489537 MTHFSDQ2M296 383 aaKnown RBP8.01□□□□□ -1.13
SF3A3-208ENST00000489537 C6orf132Q5T0Z8 1188 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 PTF1AQ7RTS3 328 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 AEBP1Q8IUX7 1158 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 ITPRIPQ8IWB1 547 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 ANKK1Q8NFD2 765 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 RAPGEF4Q8WZA2 1011 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 DDX12PQ92771 950 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 STRN4Q9NRL3 753 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 TSPYL4Q9UJ04 414 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 NOB1Q9ULX3 412 aaKnown RBP8.01□□□□□ -1.13
SF3A3-208ENST00000489537 SPG7Q9UQ90 795 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 COG6Q9Y2V7 657 aa8.01□□□□□ -1.13
SF3A3-208ENST00000489537 RBM19Q9Y4C8 960 aaKnown RBP8.01□□□□□ -1.13
SF3A3-208ENST00000489537 EN1Q05925 392 aaPredicted RBP8□□□□□ -1.13
SF3A3-208ENST00000489537 TEFQ10587 303 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 PDIA6Q15084 440 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 LAPTM4BQ86VI4 370 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 PANK1Q8TE04 598 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 ANKRD24Q8TF21 1146 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 GCC1Q96CN9 775 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 USP35Q9P2H5 1018 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 CRB1P82279 1406 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 PEAK1Q9H792 1746 aa8□□□□□ -1.13
SF3A3-208ENST00000489537 TNS1Q9HBL0 1735 aaKnown RBP8□□□□□ -1.13
SF3A3-208ENST00000489537 COL18A1P39060 1754 aa7.99□□□□□ -1.13
SF3A3-208ENST00000489537 TATP17735 454 aaPredicted RBP7.99□□□□□ -1.13
SF3A3-208ENST00000489537 COL9A1P20849 921 aa7.99□□□□□ -1.13
SF3A3-208ENST00000489537 CCT4P50991 539 aaKnown RBP7.99□□□□□ -1.13
SF3A3-208ENST00000489537 NBR1Q14596 966 aa7.99□□□□□ -1.13
SF3A3-208ENST00000489537 PROX2Q3B8N5 592 aa7.99□□□□□ -1.13
SF3A3-208ENST00000489537 ABCC4O15439 1325 aa7.99□□□□□ -1.13
SF3A3-208ENST00000489537 CEMIPQ8WUJ3 1361 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 A0A0G2JS52 829 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 MAP3K7O43318 606 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 HMMRO75330 724 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 MYT1Q01538 1121 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 FAM161AQ3B820 660 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 NBPF6Q5VWK0 638 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 INTS3Q68E01 1043 aaKnown RBP7.98□□□□□ -1.13
SF3A3-208ENST00000489537 ZNF530Q6P9A1 599 aaPredicted RBP7.98□□□□□ -1.13
SF3A3-208ENST00000489537 MCM10Q7L590 875 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 CCDC125Q86Z20 511 aa7.98□□□□□ -1.13
SF3A3-208ENST00000489537 RPAP2Q8IXW5 612 aaPredicted RBP7.98□□□□□ -1.13
SF3A3-208ENST00000489537 LTV1Q96GA3 475 aaPredicted RBP7.98□□□□□ -1.13
SF3A3-208ENST00000489537 DDRGK1Q96HY6 314 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms