RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 TBCELQ5QJ74 424 aa9.28□□□□□ -0.92
CKS1B-204ENST00000471245 ZSCAN29Q8IWY8 852 aaPredicted RBP9.28□□□□□ -0.92
CKS1B-204ENST00000471245 RNF217Q8TC41 542 aa9.28□□□□□ -0.92
CKS1B-204ENST00000471245 USP3Q9Y6I4 520 aa9.28□□□□□ -0.92
CKS1B-204ENST00000471245 SPATA31C2B4DYI2 1134 aa9.27□□□□□ -0.93
CKS1B-204ENST00000471245 COL19A1Q14993 1142 aa9.27□□□□□ -0.93
CKS1B-204ENST00000471245 PPARGC1BQ86YN6 1023 aaKnown RBP9.27□□□□□ -0.93
CKS1B-204ENST00000471245 ZNF295-AS1Q8N0V1 137 aa9.27□□□□□ -0.93
CKS1B-204ENST00000471245 BCL2L13Q9BXK5 485 aa9.27□□□□□ -0.93
CKS1B-204ENST00000471245 SAP130Q9H0E3 1048 aa9.27□□□□□ -0.93
CKS1B-204ENST00000471245 QTRT2Q9H974 415 aaKnown RBP9.27□□□□□ -0.93
CKS1B-204ENST00000471245 SERTM1A2A2V5 107 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 EML1O00423 815 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 MAN1A2O60476 641 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 MPSTP25325 297 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 SLC27A3Q5K4L6 730 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 COX20Q5RI15 118 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 LYSMD3Q7Z3D4 306 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 RGL4Q8IZJ4 473 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 RBCK1Q9BYM8 510 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 DNMT3LQ9UJW3 386 aa9.26□□□□□ -0.93
CKS1B-204ENST00000471245 UNCXA6NJT0 531 aa9.25□□□□□ -0.93
CKS1B-204ENST00000471245 TNFRSF10BO14763 440 aa9.25□□□□□ -0.93
CKS1B-204ENST00000471245 SNRPBP14678 240 aaKnown RBP9.25□□□□□ -0.93
CKS1B-204ENST00000471245 ALKBH2Q6NS38 261 aa9.25□□□□□ -0.93
CKS1B-204ENST00000471245 ZSCAN10Q96SZ4 725 aaPredicted RBP9.25□□□□□ -0.93
CKS1B-204ENST00000471245 STIM2Q9P246 746 aa9.25□□□□□ -0.93
CKS1B-204ENST00000471245 CEP164Q9UPV0 1460 aa9.25□□□□□ -0.93
CKS1B-204ENST00000471245 NDUFB5O43674 189 aa9.24□□□□□ -0.93
CKS1B-204ENST00000471245 ZNF16P17020 682 aaPredicted RBP9.24□□□□□ -0.93
CKS1B-204ENST00000471245 ABTB2Q8N961 1025 aa9.24□□□□□ -0.93
CKS1B-204ENST00000471245 GTF2E1P29083 439 aaPredicted RBP9.23□□□□□ -0.93
CKS1B-204ENST00000471245 NOS2P35228 1153 aa9.23□□□□□ -0.93
CKS1B-204ENST00000471245 ZDHHC1Q8WTX9 485 aa9.23□□□□□ -0.93
CKS1B-204ENST00000471245 CITED4Q96RK1 184 aa9.23□□□□□ -0.93
CKS1B-204ENST00000471245 FIGNL2A6NMB9 653 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 EIF1AXP47813 144 aaKnown RBP9.22□□□□□ -0.93
CKS1B-204ENST00000471245 RTN1Q16799 776 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 TREML4Q6UXN2 200 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 FBXO33Q7Z6M2 555 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 RHBDD1Q8TEB9 315 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 GIPC2Q8TF65 315 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 NIFKQ9BYG3 293 aaKnown RBP9.22□□□□□ -0.93
CKS1B-204ENST00000471245 CABP1Q9NZU7 370 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 LRFN2Q9ULH4 789 aa9.22□□□□□ -0.93
CKS1B-204ENST00000471245 WIZO95785 1651 aa9.21□□□□□ -0.93
CKS1B-204ENST00000471245 ZNF326Q5BKZ1 582 aaKnown RBP9.21□□□□□ -0.94
CKS1B-204ENST00000471245 GNASQ5JWF2 1037 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 TMEM214Q6NUQ4 689 aaKnown RBP9.21□□□□□ -0.94
CKS1B-204ENST00000471245 NPAS3Q8IXF0 933 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 ALDH16A1Q8IZ83 802 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 L3MBTL2Q969R5 705 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 BRPF3Q9ULD4 1205 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 ZNF232Q9UNY5 417 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 FANCD2Q9BXW9 1451 aa9.21□□□□□ -0.94
CKS1B-204ENST00000471245 BRD2P25440 801 aaKnown RBP9.2□□□□□ -0.94
CKS1B-204ENST00000471245 SH3PXD2AQ5TCZ1 1133 aa9.2□□□□□ -0.94
CKS1B-204ENST00000471245 C1orf53Q5VUE5 145 aa9.2□□□□□ -0.94
CKS1B-204ENST00000471245 NBPF10Q6P3W6 841 aaKnown RBP9.2□□□□□ -0.94
CKS1B-204ENST00000471245 PRICKLE2Q7Z3G6 844 aa9.2□□□□□ -0.94
CKS1B-204ENST00000471245 ARHGEF11O15085 1522 aa9.2□□□□□ -0.94
CKS1B-204ENST00000471245 SLC35F4A4IF30 521 aa9.19□□□□□ -0.94
CKS1B-204ENST00000471245 FZD6O60353 706 aa9.19□□□□□ -0.94
CKS1B-204ENST00000471245 POU4F2Q12837 409 aa9.19□□□□□ -0.94
CKS1B-204ENST00000471245 TMC7Q7Z402 723 aa9.19□□□□□ -0.94
CKS1B-204ENST00000471245 MRRFQ96E11 262 aaKnown RBP9.19□□□□□ -0.94
CKS1B-204ENST00000471245 NGLY1Q96IV0 654 aa9.19□□□□□ -0.94
CKS1B-204ENST00000471245 STK17AQ9UEE5 414 aa9.19□□□□□ -0.94
CKS1B-204ENST00000471245 PTSQ03393 145 aa9.18□□□□□ -0.94
CKS1B-204ENST00000471245 C11orf91Q3C1V1 193 aa9.18□□□□□ -0.94
CKS1B-204ENST00000471245 DMRTB1Q96MA1 342 aa9.18□□□□□ -0.94
CKS1B-204ENST00000471245 PHACTR1Q9C0D0 580 aa9.18□□□□□ -0.94
CKS1B-204ENST00000471245 KIAA1522Q9P206 1035 aaPredicted RBP9.18□□□□□ -0.94
CKS1B-204ENST00000471245 DYRK1BQ9Y463 629 aa9.18□□□□□ -0.94
CKS1B-204ENST00000471245 URB2Q14146 1524 aaKnown RBP9.17□□□□□ -0.94
CKS1B-204ENST00000471245 TREHO43280 583 aa9.17□□□□□ -0.94
CKS1B-204ENST00000471245 VAMP1P23763 118 aa9.17□□□□□ -0.94
CKS1B-204ENST00000471245 C4orf17Q53FE4 359 aa9.17□□□□□ -0.94
CKS1B-204ENST00000471245 LCE2AQ5TA79 106 aaPredicted RBP9.17□□□□□ -0.94
CKS1B-204ENST00000471245 FAM129BQ96TA1 746 aa9.17□□□□□ -0.94
CKS1B-204ENST00000471245 HCN4Q9Y3Q4 1203 aa9.17□□□□□ -0.94
CKS1B-204ENST00000471245 SENP3-EIF4A1A0A087X0R7 540 aa9.16□□□□□ -0.94
CKS1B-204ENST00000471245 SOBPA7XYQ1 873 aa9.16□□□□□ -0.94
CKS1B-204ENST00000471245 FMR1Q06787 632 aaKnown RBP eCLIP9.16□□□□□ -0.94
CKS1B-204ENST00000471245 PDE3BQ13370 1112 aa9.16□□□□□ -0.94
CKS1B-204ENST00000471245 DGKZQ13574 1117 aa9.16□□□□□ -0.94
CKS1B-204ENST00000471245 EAPPQ56P03 285 aaPredicted RBP9.16□□□□□ -0.94
CKS1B-204ENST00000471245 NXF1Q9UBU9 619 aaKnown RBP9.16□□□□□ -0.94
CKS1B-204ENST00000471245 GPC6Q9Y625 555 aaPredicted RBP9.16□□□□□ -0.94
CKS1B-204ENST00000471245 PARP3Q9Y6F1 533 aa9.16□□□□□ -0.94
CKS1B-204ENST00000471245 PRDM2Q13029 1718 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 A0A1B0GTH6 734 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 AAMPQ13685 434 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 HIF1AQ16665 826 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 ETFBKMTQ8IXQ9 262 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 ALKBH8Q96BT7 664 aaKnown RBP9.15□□□□□ -0.94
CKS1B-204ENST00000471245 GMCL1Q96IK5 515 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 BCL11AQ9H165 835 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 TIMMDC1Q9NPL8 285 aa9.15□□□□□ -0.94
CKS1B-204ENST00000471245 IGSF5Q9NSI5 407 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms