RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 NACAP1Q9BZK3 213 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 DNAI2Q9GZS0 605 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 EGLN3Q9H6Z9 239 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 PXMP2Q9NR77 195 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 DDX25Q9UHL0 483 aaKnown RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 SLC24A2Q9UI40 661 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 GINS2Q9Y248 185 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 CCDC171Q6TFL3 1326 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 RAD50Q92878 1312 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ZFHX4Q86UP3 3567 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ARID2Q68CP9 1835 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 TANC1Q9C0D5 1861 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 MYH8P13535 1937 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 TMEM129A0AVI4 362 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 ARHGEF33A8MVX0 844 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 HAS3O00219 553 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 SLC1A7O00341 560 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CDX4O14627 284 aaPredicted RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 ATP9AO75110 1047 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CSDE1O75534 798 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 CHRNA1P02708 482 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CSN3P07498 182 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 HSPD1P10809 573 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 ATP6V1B1P15313 513 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CASTP20810 708 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 AADACP22760 399 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 LMO2P25791 158 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 MC5RP33032 325 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 RFC2P35250 354 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CASP2P42575 452 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 ZNF75DP51815 510 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CLDN15P56746 228 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 BTG3Q14201 252 aaPredicted RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 ZNF79Q15937 498 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CELF3Q5SZQ8 465 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 SPOUT1Q5T280 376 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 C9orf66Q5T8R8 295 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CWC27Q6UX04 472 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 STOX1Q6ZVD7 989 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 SERINC5Q86VE9 423 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 MAML2Q8IZL2 1156 aaPredicted RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 SLC4A11Q8NBS3 891 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 TSPAN14Q8NG11 270 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 PPTC7Q8NI37 304 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 PHOSPHO2Q8TCD6 241 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 DNAJB3Q8WWF6 145 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 SEPT8Q92599 483 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 MRPL38Q96DV4 380 aaKnown RBP2.57□□□□□ -2
SCFD1-219ENST00000556413 TCEANC2Q96MN5 208 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 MUS81Q96NY9 551 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 FEVQ99581 238 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CPNE1Q99829 537 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 DCTPP1Q9H773 170 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 DNAJC4Q9NNZ3 241 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 CLEC5AQ9NY25 188 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 IL17BQ9UHF5 180 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 ADGRA3Q8IWK6 1321 aa2.57□□□□□ -2
SCFD1-219ENST00000556413 ZNFX1Q9P2E3 1918 aaKnown RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 MYH4Q9Y623 1939 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 CFAP54Q96N23 3096 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 EDDM13A0A1B0GTR0 161 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 TCRBV21S2A2A0A5A6 115 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 TMEM150BA6NC51 233 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 CASTOR2A6NHX0 329 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 HIDE1A8MVS5 230 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 CYTH3O43739 400 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 MMP1P03956 469 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 ATP5BP06576 529 aaKnown RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 ZFYP08048 801 aaPredicted RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 POLR2MP0CAP2 368 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 FAM200BP0CF97 657 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 CCND2P30279 289 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 TCF7P36402 384 aaPredicted RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 MGAT3Q09327 533 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 ALCAMQ13740 583 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 SIX1Q15475 284 aaPredicted RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 STXBP2Q15833 593 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 LEMD1Q68G75 181 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 ZBTB49Q6ZSB9 765 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 SLC24A5Q71RS6 500 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 CENPVQ7Z7K6 275 aaPredicted RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 THNSL1Q8IYQ7 743 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 TMEM105Q8N8V8 129 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 POGLUT1Q8NBL1 392 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 OR4Q3Q8NH05 313 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 METTL21AQ8WXB1 218 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 TOP1MTQ969P6 601 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 MOB3AQ96BX8 217 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 OTUB1Q96FW1 271 aaPredicted RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 CDCA3Q99618 268 aaPredicted RBP2.56□□□□□ -2
SCFD1-219ENST00000556413 CENPOQ9BU64 300 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 SLC39A8Q9C0K1 460 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 POMKQ9H5K3 350 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 PDFQ9HBH1 243 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 MAD2L2Q9UI95 211 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 SLC6A5Q9Y345 797 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 Q9Y3F1 56 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 WDR19Q8NEZ3 1342 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 TRANK1O15050 2925 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 SCN10AQ9Y5Y9 1956 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms