RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 NME3Q13232 169 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZNF177Q13360 481 aaPredicted RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 DLG2Q15700 870 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 CST6Q15828 149 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 KLHL40Q2TBA0 621 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 CCDC14Q49A88 953 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 HSP90AA4PQ58FG1 418 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 PDSS1Q5T2R2 415 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 N4BP2L1Q5TBK1 243 aaPredicted RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM46CQ5VWP2 391 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 TMEM198Q66K66 360 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 NEK5Q6P3R8 708 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 WDR59Q6PJI9 974 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 IL27RAQ6UWB1 636 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 LRRC31Q6UY01 552 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 MEX3BQ6ZN04 569 aaKnown RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 PLEKHM3Q6ZWE6 761 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 USP43Q70EL4 1123 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 Q75L30 129 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 NFE4Q86UQ8 179 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 IQCHQ86VS3 1027 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZSCAN30Q86W11 494 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 PM20D2Q8IYS1 436 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 HDDC3Q8N4P3 179 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 MINDY1Q8N5J2 469 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 SLC5A8Q8N695 610 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 GCSAMQ8N6F7 178 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 DCAF4L2Q8NA75 395 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 NEK11Q8NG66 645 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 OR52K2Q8NGK3 314 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 OR2T34Q8NGX1 318 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 TMEM255BQ8WV15 326 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 LINGO1Q96FE5 620 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 RPRD1AQ96P16 312 aaPredicted RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 GFI1Q99684 422 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 MMP28Q9H239 520 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 NEUROG2Q9H2A3 272 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM207AQ9NSI2 230 aaPredicted RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 TRMT1Q9NXH9 659 aaKnown RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 FBXL12Q9NXK8 326 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 AIPL1Q9NZN9 384 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 OGFRQ9NZT2 677 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 KLHL9Q9P2J3 617 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 POLG2Q9UHN1 485 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 ANGPTL2Q9UKU9 493 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 VANGL2Q9ULK5 521 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 NCKAP1Q9Y2A7 1128 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 CMAHPQ9Y471 501 aa3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 TMEM184BQ9Y519 407 aaPredicted RBP3.39□□□□□ -1.87
CKS1BP3-201ENST00000600888 APC2O95996 2303 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 UNC13CQ8NB66 2214 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 SYNJ2BP-COX16A0A087WUM0 186 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 A0A0B4J293 547 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 A0A1W2PR77 199 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM172BPA6NC97 362 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZSCAN5CA6NGD5 496 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 MEI4A8MW99 385 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 GOLGA8SH3BPF8 625 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 P2RY10O00398 339 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 AP3D1O14617 1153 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 DVL1O14640 695 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 FLRT2O43155 660 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 FGF17O60258 216 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 TMCC2O75069 709 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 TRIM16O95361 564 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 RHOCP08134 193 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 KRT3P12035 628 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 PDGFRAP16234 1089 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZNF23P17027 643 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 PTMSP20962 102 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 OR1E1P30953 314 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 SDC4P31431 198 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 GARSP41250 739 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 NSFP46459 744 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 STK19P49842 368 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 SERPINH1P50454 418 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 NOVA1P51513 510 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 CTSCP53634 463 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 DVL1P1P54792 670 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 YBEYP58557 167 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 RPL24P83731 157 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 GNA12Q03113 381 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 SPOCK1Q08629 439 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 GAGE5Q13069 117 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 GAGE6Q13070 117 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 FILIP1LQ4L180 1135 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 RAB6CQ53S08 254 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 C2CD6Q53TS8 623 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 TAF3Q5VWG9 929 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 C19orf48Q6RUI8 117 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 NLRP14Q86W24 1093 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 TRIM69Q86WT6 500 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM131BQ86XD5 332 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 PSTKQ8IV42 348 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 MMAAQ8IVH4 418 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 CEP97Q8IW35 865 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 DCUN1D3Q8IWE4 304 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 MCOLN2Q8IZK6 566 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 STK40Q8N2I9 435 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 DEFB119Q8N690 84 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms