RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 CNIH4Q9P003 139 aa4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 TXNDC16Q9P2K2 825 aa4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 TINAGQ9UJW2 476 aa4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 CCL26Q9Y258 94 aa4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 B3GALT5Q9Y2C3 310 aa4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 HES2Q9Y543 173 aa4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.41□□□□□ -1.7
HMGB1P23-201ENST00000518743 WNK1Q9H4A3 2382 aa4.4□□□□□ -1.7
HMGB1P23-201ENST00000518743 A0A0U1RQJ8 604 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 RNF103-CHMP3A0A140T963 221 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 A0A1B0GTQ1 180 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MYMKA6NI61 221 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 PRR32B1ATL7 298 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 J3KR12 359 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 RNF103O00237 685 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 SOCS6O14544 535 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 GCNT3O95395 438 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 FGF19O95750 216 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 NUDT3O95989 172 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 IGHV2-70P01814 119 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 H1F0P07305 194 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 INHBAP08476 426 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 NR1D1P20393 614 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MAPK3P27361 379 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TKTP29401 623 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TIA1P31483 386 aaKnown RBP eCLIP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 PEX5P50542 639 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MFAP3P55082 362 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 BPIFB3P59826 476 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 POLR2LP62875 67 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 RPL10AP62906 217 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 RUNX1T1Q06455 604 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 CRYZQ08257 329 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 PLD1Q13393 1074 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TNK1Q13470 666 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 RPS6KA1Q15418 735 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TWIST1Q15672 202 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 CALCRLQ16602 461 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 ASPRV1Q53RT3 343 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TCTE1Q5JU00 501 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 ZSCAN25Q6NSZ9 544 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 SHC4Q6S5L8 630 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 LINGO4Q6UY18 593 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MEPCEQ7L2J0 689 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TRMT11Q7Z4G4 463 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TGIF2LYQ8IUE0 185 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MAP7D3Q8IWC1 876 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 FOXRED2Q8IWF2 684 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 PEX5LQ8IYB4 626 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 RNF113BQ8IZP6 322 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 CNNM3Q8NE01 707 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 CHDHQ8NE62 594 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 LPCAT1Q8NF37 534 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 NCOA7Q8NI08 942 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 DENND1AQ8TEH3 1009 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 NSMAFQ92636 917 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 DPF1Q92782 380 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 PIGTQ969N2 578 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 SNRNP40Q96DI7 357 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 SLC25A33Q9BSK2 321 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 QTRT1Q9BXR0 403 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 NAPBQ9H115 298 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MINDY3Q9H8M7 445 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 IARS2Q9NSE4 1012 aaKnown RBP4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 SLCO1C1Q9NYB5 712 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 TP53TG5Q9Y2B4 290 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 NUMA1Q14980 2115 aa4.4□□□□□ -1.71
HMGB1P23-201ENST00000518743 MGAM2Q2M2H8 2515 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 CUBNO60494 3623 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 ZNF106Q9H2Y7 1883 aaKnown RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 CNTRLQ7Z7A1 2325 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 ZNF469Q96JG9 3925 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 A0A1W2PP11 408 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 A0A1W2PPW3 197 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 hDV102S1A0JD36 115 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 TCP11X1B4DZS4 312 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 I6L893 689 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 B3GALNT1O75752 331 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 BMP10O95393 424 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 IGHV4-30-4P0DP06 118 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 LIPCP11150 499 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 DESP17661 470 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 EPORP19235 508 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 TYMPP19971 482 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 CBLP22681 906 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 ACP1P24666 158 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 USP8P40818 1118 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 IER3P46695 156 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 QARSP47897 775 aaKnown RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 PTH2RP49190 550 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 ARRB1P49407 418 aaPredicted RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 RGS7P49802 495 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 RBMS2Q15434 407 aaKnown RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 OASLQ15646 514 aaKnown RBP4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 ISXQ2M1V0 245 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 PRTGQ2VWP7 1150 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 RAB6CQ53S08 254 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 TOR1AIP1Q5JTV8 583 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 C11orf63Q6NUN7 778 aa4.39□□□□□ -1.71
HMGB1P23-201ENST00000518743 C8orf82Q6P1X6 216 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms