RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PFDN4Q9NQP4 134 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 AHSPQ9NZD4 102 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 TRPC4Q9UBN4 977 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 VPS29Q9UBQ0 182 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 CROTQ9UKG9 612 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 ACSL6Q9UKU0 697 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 DNAJC15Q9Y5T4 150 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 SCN2AQ99250 2005 aa14.19□□□□□ -0.14
NUP54-213ENST00000513352 ARHGAP10A1A4S6 786 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 C1QTNF9BB2RNN3 333 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 RGS14O43566 566 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 SEMA3DO95025 777 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 C1QTNF9P0C862 333 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 TCN2P20062 427 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 STAT5AP42229 794 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 MTTPP55157 894 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 DSG2Q14126 1118 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 SYT16Q17RD7 645 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 OR4C11Q6IEV9 310 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 UNQ6494/PRO21346Q6UXR6 183 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 UBE3DQ7Z6J8 389 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 HOMEZQ8IX15 550 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 PRSS58Q8IYP2 241 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 OR5T3Q8NGG3 340 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 KCNE4Q8WWG9 221 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 KIAA1143Q96AT1 154 aaPredicted RBP14.18□□□□□ -0.14
NUP54-213ENST00000513352 SERINC2Q96SA4 455 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 RBCK1Q9BYM8 510 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 SPRY4Q9C004 299 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 TUBB1Q9H4B7 451 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 SLCO1B3Q9NPD5 702 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 PSD3Q9NYI0 1048 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 PPT2Q9UMR5 302 aa14.18□□□□□ -0.14
NUP54-213ENST00000513352 CEP295Q9C0D2 2601 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 CCDC88CQ9P219 2028 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 TCP11X1B4DZS4 312 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 H0YIG0 161 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 PSMD12O00232 456 aaPredicted RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 TLX3O43711 291 aaPredicted RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 GBAP04062 536 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 SMIM10L1P0DMW3 83 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 ITGAXP20702 1163 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 ATP5A1P25705 553 aaKnown RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 DLSTP36957 453 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 OCA2Q04671 838 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 ACSM2AQ08AH3 577 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 UGT3A2Q3SY77 523 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 MFSD4BQ5TF39 518 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 ZNF385CQ66K41 422 aaPredicted RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 ACSM2BQ68CK6 577 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 CYP20A1Q6UW02 462 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 FAM198BQ6UWH4 519 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 ZNF793Q6ZN11 406 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 COX15Q7KZN9 410 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 PAGE2Q7Z2X7 111 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 COMMD6Q7Z4G1 85 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 VASH2Q86V25 355 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 NUDT13Q86X67 352 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 C1orf52Q8N6N3 182 aaKnown RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 EFCAB3Q8N7B9 438 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 AMER3Q8N944 861 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 ZNF248Q8NDW4 579 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 NKD1Q969G9 470 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 C19orf60Q96EN9 201 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 PEX11GQ96HA9 241 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 SMIM10Q96HG1 83 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 C7orf26Q96N11 449 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 QRFPRQ96P65 431 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 DCBLD2Q96PD2 775 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 NUF2Q9BZD4 464 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 GPN2Q9H9Y4 310 aaPredicted RBP14.17□□□□□ -0.14
NUP54-213ENST00000513352 RIC8BQ9NVN3 520 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 CTSFQ9UBX1 484 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 MAP4K5Q9Y4K4 846 aa14.17□□□□□ -0.14
NUP54-213ENST00000513352 LOC101059948A0A1B0GTJ6 334 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 ATP6AP2A0A1C7CYW4 349 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 SERTM1A2A2V5 107 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 POLR3GO15318 223 aaPredicted RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 CHST10O43529 356 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 EEDO75530 441 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 ATP6AP2O75787 350 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 KLK1P06870 262 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 VIMP08670 466 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 RNH1P13489 461 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 HIST1H1TP22492 207 aaPredicted RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 MDH1P40925 334 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 XCR1P46094 333 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 RPS15P62841 145 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 DNASE1L3Q13609 305 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 NCF4Q15080 339 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 GALNTL6Q49A17 601 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 SPIN4Q56A73 249 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 SHISA6Q6ZSJ9 500 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 OVCH1Q7RTY7 1134 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 TRIM46Q7Z4K8 759 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 DTX1Q86Y01 620 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 METTL4Q8N3J2 472 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 ENDOVQ8N8Q3 282 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 ACOT4Q8N9L9 421 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms