RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 SLC39A6Q13433 755 aa22.32■■□□□ 1.16
CLN3-255ENST00000637100 BCL2L12Q9HB09 334 aa22.32■■□□□ 1.16
CLN3-255ENST00000637100 ZPR1O75312 459 aa22.31■■□□□ 1.16
CLN3-255ENST00000637100 HMOX1P09601 288 aa22.31■■□□□ 1.16
CLN3-255ENST00000637100 CHRNA5P30532 468 aa22.31■■□□□ 1.16
CLN3-255ENST00000637100 RBM46Q8TBY0 533 aaKnown RBP22.31■■□□□ 1.16
CLN3-255ENST00000637100 UBR2Q8IWV8 1755 aa22.3■■□□□ 1.16
CLN3-255ENST00000637100 DIAPH1O60610 1272 aaKnown RBP22.3■■□□□ 1.16
CLN3-255ENST00000637100 NFIXQ14938 502 aa22.3■■□□□ 1.16
CLN3-255ENST00000637100 CCER1Q8TC90 406 aaPredicted RBP22.3■■□□□ 1.16
CLN3-255ENST00000637100 ZBTB1Q9Y2K1 713 aa22.3■■□□□ 1.16
CLN3-255ENST00000637100 COL3A1P02461 1466 aaPredicted RBP22.29■■□□□ 1.16
CLN3-255ENST00000637100 COL15A1P39059 1388 aa22.29■■□□□ 1.16
CLN3-255ENST00000637100 VIRMAQ69YN4 1812 aaKnown RBP22.28■■□□□ 1.16
CLN3-255ENST00000637100 AFDNP55196 1824 aaKnown RBP22.27■■□□□ 1.16
CLN3-255ENST00000637100 SBF1O95248 1867 aa22.27■■□□□ 1.16
CLN3-255ENST00000637100 EIF5P55010 431 aaKnown RBP22.27■■□□□ 1.16
CLN3-255ENST00000637100 ZC3H4Q9UPT8 1303 aaKnown RBP22.27■■□□□ 1.16
CLN3-255ENST00000637100 SERPINB2P05120 415 aa22.25■■□□□ 1.15
CLN3-255ENST00000637100 FSTL1Q12841 308 aa22.25■■□□□ 1.15
CLN3-255ENST00000637100 IL17REQ8NFR9 667 aa22.24■■□□□ 1.15
CLN3-255ENST00000637100 RNF181Q9P0P0 153 aa22.24■■□□□ 1.15
CLN3-255ENST00000637100 DLEC1Q9Y238 1755 aa22.24■■□□□ 1.15
CLN3-255ENST00000637100 KDM2BQ8NHM5 1336 aa22.24■■□□□ 1.15
CLN3-255ENST00000637100 STARD3NLO95772 234 aa22.22■■□□□ 1.15
CLN3-255ENST00000637100 PRELPP51888 382 aa22.22■■□□□ 1.15
CLN3-255ENST00000637100 TEX13AQ9BXU3 409 aaPredicted RBP22.22■■□□□ 1.15
CLN3-255ENST00000637100 CEMIPQ8WUJ3 1361 aa22.22■■□□□ 1.15
CLN3-255ENST00000637100 CC2D1BQ5T0F9 858 aaKnown RBP22.21■■□□□ 1.15
CLN3-255ENST00000637100 ZNF790Q6PG37 636 aa22.21■■□□□ 1.15
CLN3-255ENST00000637100 ZNF496Q96IT1 587 aaPredicted RBP22.21■■□□□ 1.15
CLN3-255ENST00000637100 HEG1Q9ULI3 1381 aa22.21■■□□□ 1.15
CLN3-255ENST00000637100 SIPA1L3O60292 1781 aaPredicted RBP22.2■■□□□ 1.14
CLN3-255ENST00000637100 A0A087WZG4 1122 aa22.2■■□□□ 1.14
CLN3-255ENST00000637100 TTLL6Q8N841 843 aa22.2■■□□□ 1.14
CLN3-255ENST00000637100 TNRC6CQ9HCJ0 1690 aaKnown RBP22.2■■□□□ 1.14
CLN3-255ENST00000637100 GNAT3A8MTJ3 354 aa22.19■■□□□ 1.14
CLN3-255ENST00000637100 LMNB1P20700 586 aa22.19■■□□□ 1.14
CLN3-255ENST00000637100 GAS2L2Q8NHY3 880 aa22.19■■□□□ 1.14
CLN3-255ENST00000637100 WDR90Q96KV7 1748 aa22.19■■□□□ 1.14
CLN3-255ENST00000637100 CARMIL3Q8ND23 1372 aa22.18■■□□□ 1.14
CLN3-255ENST00000637100 JMYQ8N9B5 988 aa22.18■■□□□ 1.14
CLN3-255ENST00000637100 RRAGCQ9HB90 399 aa22.18■■□□□ 1.14
CLN3-255ENST00000637100 PDZRN3Q9UPQ7 1066 aa22.18■■□□□ 1.14
CLN3-255ENST00000637100 CANXP27824 592 aaKnown RBP22.17■■□□□ 1.14
CLN3-255ENST00000637100 IL6STP40189 918 aaPredicted RBP22.17■■□□□ 1.14
CLN3-255ENST00000637100 TTC5Q8N0Z6 440 aa22.17■■□□□ 1.14
CLN3-255ENST00000637100 GLTPD2A6NH11 291 aa22.16■■□□□ 1.14
CLN3-255ENST00000637100 RASSF7Q02833 373 aa22.16■■□□□ 1.14
CLN3-255ENST00000637100 H0YIN7 160 aa22.15■■□□□ 1.14
CLN3-255ENST00000637100 NFKBIEO00221 500 aa22.15■■□□□ 1.14
CLN3-255ENST00000637100 TEFQ10587 303 aa22.15■■□□□ 1.14
CLN3-255ENST00000637100 TBC1D9BQ66K14 1250 aa22.15■■□□□ 1.14
CLN3-255ENST00000637100 C2CD5Q86YS7 1000 aa22.15■■□□□ 1.14
CLN3-255ENST00000637100 C16orf71Q8IYS4 520 aaPredicted RBP22.15■■□□□ 1.14
CLN3-255ENST00000637100 BRIP1Q9BX63 1249 aa22.15■■□□□ 1.14
CLN3-255ENST00000637100 SCN7AQ01118 1682 aa22.14■■□□□ 1.14
CLN3-255ENST00000637100 KLRG1Q96E93 195 aa22.14■■□□□ 1.13
CLN3-255ENST00000637100 ANKRD31Q8N7Z5 1873 aa22.13■■□□□ 1.13
CLN3-255ENST00000637100 PHACTR3Q96KR7 559 aa22.13■■□□□ 1.13
CLN3-255ENST00000637100 PRR5LQ6MZQ0 368 aa22.12■■□□□ 1.13
CLN3-255ENST00000637100 FMNL2Q96PY5 1086 aa22.12■■□□□ 1.13
CLN3-255ENST00000637100 RSPH6AQ9H0K4 717 aa22.12■■□□□ 1.13
CLN3-255ENST00000637100 U2SURPO15042 1029 aaKnown RBP22.11■■□□□ 1.13
CLN3-255ENST00000637100 CAMTA2O94983 1202 aa22.11■■□□□ 1.13
CLN3-255ENST00000637100 VEGFAP15692 232 aaPredicted RBP22.11■■□□□ 1.13
CLN3-255ENST00000637100 PDE6BP35913 854 aa22.11■■□□□ 1.13
CLN3-255ENST00000637100 SMC1BQ8NDV3 1235 aa22.11■■□□□ 1.13
CLN3-255ENST00000637100 LTBP3Q9NS15 1303 aa22.1■■□□□ 1.13
CLN3-255ENST00000637100 POTECB2RU33 542 aa22.1■■□□□ 1.13
CLN3-255ENST00000637100 TBC1D2BQ9UPU7 963 aa22.1■■□□□ 1.13
CLN3-255ENST00000637100 A1BGP04217 495 aa22.09■■□□□ 1.13
CLN3-255ENST00000637100 BICDL1Q6ZP65 573 aa22.09■■□□□ 1.13
CLN3-255ENST00000637100 RGL2O15211 777 aa22.08■■□□□ 1.13
CLN3-255ENST00000637100 KCNQ3O43525 872 aa22.08■■□□□ 1.13
CLN3-255ENST00000637100 HTRA3P83110 453 aa22.08■■□□□ 1.13
CLN3-255ENST00000637100 FER1L6Q2WGJ9 1857 aa22.07■■□□□ 1.12
CLN3-255ENST00000637100 PRKAR2BP31323 418 aa22.07■■□□□ 1.12
CLN3-255ENST00000637100 BTBD11A6QL63 1104 aa22.06■■□□□ 1.12
CLN3-255ENST00000637100 CLEC4GQ6UXB4 293 aa22.06■■□□□ 1.12
CLN3-255ENST00000637100 USP16Q9Y5T5 823 aa22.06■■□□□ 1.12
CLN3-255ENST00000637100 COL11A2P13942 1736 aaPredicted RBP22.06■■□□□ 1.12
CLN3-255ENST00000637100 TIAM2Q8IVF5 1701 aa22.06■■□□□ 1.12
CLN3-255ENST00000637100 KLRG2A4D1S0 409 aaPredicted RBP22.05■■□□□ 1.12
CLN3-255ENST00000637100 SRGNP10124 158 aa22.05■■□□□ 1.12
CLN3-255ENST00000637100 STYK1Q6J9G0 422 aa22.05■■□□□ 1.12
CLN3-255ENST00000637100 SETDB2Q96T68 719 aa22.05■■□□□ 1.12
CLN3-255ENST00000637100 CCDC88AQ3V6T2 1871 aa22.05■■□□□ 1.12
CLN3-255ENST00000637100 BCORQ6W2J9 1755 aa22.04■■□□□ 1.12
CLN3-255ENST00000637100 DICER1Q9UPY3 1922 aaKnown RBP22.04■■□□□ 1.12
CLN3-255ENST00000637100 HTATSF1O43719 755 aaKnown RBP22.03■■□□□ 1.12
CLN3-255ENST00000637100 C21orf2O43822 256 aa22.03■■□□□ 1.12
CLN3-255ENST00000637100 DZIP3Q86Y13 1208 aaKnown RBP22.03■■□□□ 1.12
CLN3-255ENST00000637100 C7orf43Q8WVR3 580 aa22.03■■□□□ 1.12
CLN3-255ENST00000637100 CNKSR1Q969H4 720 aa22.03■■□□□ 1.12
CLN3-255ENST00000637100 ZNF622Q969S3 477 aaKnown RBP eCLIP22.03■■□□□ 1.12
CLN3-255ENST00000637100 CFAP53Q96M91 514 aa22.03■■□□□ 1.12
CLN3-255ENST00000637100 DPY19L2Q6NUT2 758 aa22.02■■□□□ 1.12
CLN3-255ENST00000637100 CNBD1Q8NA66 436 aa22.02■■□□□ 1.12
CLN3-255ENST00000637100 SNRPA1P09661 255 aaKnown RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms