RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 SETDB1Q15047 1291 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 CEP131Q9UPN4 1083 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 MICAL1Q8TDZ2 1067 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 GTF3C6Q969F1 213 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 CNTLNQ9NXG0 1405 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 CTAGE15A4D2H0 777 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 CTAGE8P0CG41 777 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 CTAGE4Q8IX94 777 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 ARFGAP2Q8N6H7 521 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 NOL7Q9UMY1 257 aaKnown RBP17.31■□□□□ 0.36
COL5A1-208ENST00000618395 ZC4H2Q9NQZ6 224 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 BMP2KQ9NSY1 1161 aaPredicted RBP17.31■□□□□ 0.36
COL5A1-208ENST00000618395 FGFR1OPO95684 399 aaKnown RBP17.31■□□□□ 0.36
COL5A1-208ENST00000618395 CTNNBL1Q8WYA6 563 aaPredicted RBP17.31■□□□□ 0.36
COL5A1-208ENST00000618395 ZSCAN23Q3MJ62 389 aa17.3■□□□□ 0.36
COL5A1-208ENST00000618395 PPFIA2O75334 1257 aa17.3■□□□□ 0.36
COL5A1-208ENST00000618395 KDM4AO75164 1064 aa17.3■□□□□ 0.36
COL5A1-208ENST00000618395 XRCC6P12956 609 aaKnown RBP eCLIP17.3■□□□□ 0.36
COL5A1-208ENST00000618395 DNA2P51530 1060 aa17.3■□□□□ 0.36
COL5A1-208ENST00000618395 KLHL40Q2TBA0 621 aa17.3■□□□□ 0.36
COL5A1-208ENST00000618395 BRD4O60885 1362 aaPredicted RBP17.3■□□□□ 0.36
COL5A1-208ENST00000618395 APBB1IPQ7Z5R6 666 aaPredicted RBP17.29■□□□□ 0.36
COL5A1-208ENST00000618395 TMEM132AQ24JP5 1023 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 GBP5Q96PP8 586 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 ERCC6Q03468 1493 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 CASTP20810 708 aaKnown RBP17.29■□□□□ 0.36
COL5A1-208ENST00000618395 TRIM4Q9C037 500 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 ZHX3Q9H4I2 956 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 PEX19P40855 299 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 RIPK4P57078 832 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 LRSAM1Q6UWE0 723 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 TPD52P55327 224 aaPredicted RBP17.29■□□□□ 0.36
COL5A1-208ENST00000618395 PHLDB2Q86SQ0 1253 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 AFAP1L1Q8TED9 768 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 MLECQ14165 292 aa17.29■□□□□ 0.36
COL5A1-208ENST00000618395 UBTFL1P0CB47 393 aaPredicted RBP17.28■□□□□ 0.36
COL5A1-208ENST00000618395 PRR16Q569H4 304 aa17.28■□□□□ 0.36
COL5A1-208ENST00000618395 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL5A1-208ENST00000618395 DIXDC1Q155Q3 683 aa17.28■□□□□ 0.36
COL5A1-208ENST00000618395 IQCGQ9H095 443 aaKnown RBP17.28■□□□□ 0.36
COL5A1-208ENST00000618395 MAP7D1Q3KQU3 841 aa17.27■□□□□ 0.36
COL5A1-208ENST00000618395 CIB2O75838 187 aa17.27■□□□□ 0.36
COL5A1-208ENST00000618395 MATR3P43243 847 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL5A1-208ENST00000618395 DDX19AQ9NUU7 478 aaKnown RBP17.27■□□□□ 0.36
COL5A1-208ENST00000618395 TTC36A6NLP5 189 aa17.27■□□□□ 0.36
COL5A1-208ENST00000618395 MVPQ14764 893 aaKnown RBP17.27■□□□□ 0.36
COL5A1-208ENST00000618395 ST20-MTHFSA0A0A6YYL1 179 aa17.27■□□□□ 0.36
COL5A1-208ENST00000618395 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL5A1-208ENST00000618395 IFI16Q16666 785 aaKnown RBP17.27■□□□□ 0.36
COL5A1-208ENST00000618395 SMG6Q86US8 1419 aaKnown RBP17.27■□□□□ 0.35
COL5A1-208ENST00000618395 LUC7L3O95232 432 aaKnown RBP17.26■□□□□ 0.35
COL5A1-208ENST00000618395 SLC3A2P08195 630 aaKnown RBP17.26■□□□□ 0.35
COL5A1-208ENST00000618395 BLOC1S2Q6QNY1 142 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 DNAI1Q9UI46 699 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 TERF1P54274 439 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 SRCIN1Q9C0H9 1055 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 PDRG1Q9NUG6 133 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 ZNF165P49910 485 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 KIAA0753Q2KHM9 967 aa17.26■□□□□ 0.35
COL5A1-208ENST00000618395 MAP4K4O95819 1239 aaPredicted RBP17.26■□□□□ 0.35
COL5A1-208ENST00000618395 NUP155O75694 1391 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 CETN3O15182 167 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 SKILP12757 684 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 C1orf141Q5JVX7 400 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 TSNARE1Q96NA8 513 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 PSMC4P43686 418 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 UBE2HP62256 183 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 NDUFAB1O14561 156 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 ERCC3P19447 782 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 GNAI1P63096 354 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 RNF10Q8N5U6 811 aaKnown RBP17.25■□□□□ 0.35
COL5A1-208ENST00000618395 RASAL2Q9UJF2 1139 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 CCDC57Q2TAC2 916 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 CCDC170Q8IYT3 715 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 MRFAP1L1Q96HT8 127 aa17.25■□□□□ 0.35
COL5A1-208ENST00000618395 NEDD9Q14511 834 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 TPX2Q9ULW0 747 aaKnown RBP17.24■□□□□ 0.35
COL5A1-208ENST00000618395 INTS8Q75QN2 995 aaKnown RBP17.24■□□□□ 0.35
COL5A1-208ENST00000618395 PHACTR2O75167 634 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 CEP85LQ5SZL2 805 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.24■□□□□ 0.35
COL5A1-208ENST00000618395 NEUROD6Q96NK8 337 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 TEFQ10587 303 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 LRRC23Q53EV4 343 aaPredicted RBP17.24■□□□□ 0.35
COL5A1-208ENST00000618395 CKAP2LQ8IYA6 745 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 MORC4Q8TE76 937 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 SELENOOQ9BVL4 669 aa17.24■□□□□ 0.35
COL5A1-208ENST00000618395 DHX57Q6P158 1386 aaKnown RBP17.24■□□□□ 0.35
COL5A1-208ENST00000618395 PRPF4BQ13523 1007 aaKnown RBP17.23■□□□□ 0.35
COL5A1-208ENST00000618395 EIF2S2P20042 333 aaKnown RBP17.23■□□□□ 0.35
COL5A1-208ENST00000618395 CHD1LQ86WJ1 897 aa17.23■□□□□ 0.35
COL5A1-208ENST00000618395 NGDNQ8NEJ9 315 aaKnown RBP17.23■□□□□ 0.35
COL5A1-208ENST00000618395 MACROD2A1Z1Q3 448 aa17.23■□□□□ 0.35
COL5A1-208ENST00000618395 ALDH3A1P30838 453 aa17.23■□□□□ 0.35
COL5A1-208ENST00000618395 KRT32Q14532 448 aa17.23■□□□□ 0.35
COL5A1-208ENST00000618395 ZNF830Q96NB3 372 aaPredicted RBP17.23■□□□□ 0.35
COL5A1-208ENST00000618395 TRIM35Q9UPQ4 493 aa17.23■□□□□ 0.35
COL5A1-208ENST00000618395 CTNNA2P26232 953 aa17.23■□□□□ 0.35
COL5A1-208ENST00000618395 TDRD12Q587J7 1177 aaKnown RBP17.23■□□□□ 0.35
COL5A1-208ENST00000618395 GGT6Q6P531 493 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms