RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 DNAJC10Q8IXB1 793 aa11.47□□□□□ -0.57
USP28-215ENST00000545608 SLC52A2Q9HAB3 445 aa11.47□□□□□ -0.57
USP28-215ENST00000545608 SRP68Q9UHB9 627 aaKnown RBP11.47□□□□□ -0.57
USP28-215ENST00000545608 SLC39A6Q13433 755 aa11.46□□□□□ -0.57
USP28-215ENST00000545608 PAXIP1Q6ZW49 1069 aaPredicted RBP11.46□□□□□ -0.57
USP28-215ENST00000545608 CCDC87Q9NVE4 849 aa11.46□□□□□ -0.57
USP28-215ENST00000545608 PARP3Q9Y6F1 533 aa11.46□□□□□ -0.57
USP28-215ENST00000545608 ZNF831Q5JPB2 1677 aa11.46□□□□□ -0.58
USP28-215ENST00000545608 PXDNLA1KZ92 1463 aa11.45□□□□□ -0.58
USP28-215ENST00000545608 ADCY9O60503 1353 aa11.45□□□□□ -0.58
USP28-215ENST00000545608 DPEP1P16444 411 aa11.45□□□□□ -0.58
USP28-215ENST00000545608 ZNF526Q8TF50 670 aaPredicted RBP11.45□□□□□ -0.58
USP28-215ENST00000545608 C10orf71Q711Q0 1435 aa11.44□□□□□ -0.58
USP28-215ENST00000545608 USP42Q9H9J4 1324 aaKnown RBP11.44□□□□□ -0.58
USP28-215ENST00000545608 GPBP1L1Q9HC44 474 aaPredicted RBP11.44□□□□□ -0.58
USP28-215ENST00000545608 BCS1LQ9Y276 419 aa11.44□□□□□ -0.58
USP28-215ENST00000545608 CICQ96RK0 1608 aaPredicted RBP11.44□□□□□ -0.58
USP28-215ENST00000545608 MYH14Q7Z406 1995 aaKnown RBP11.44□□□□□ -0.58
USP28-215ENST00000545608 COL5A3P25940 1745 aaPredicted RBP11.43□□□□□ -0.58
USP28-215ENST00000545608 CYP19A1P11511 503 aaPredicted RBP11.43□□□□□ -0.58
USP28-215ENST00000545608 KCNA3P22001 575 aa11.43□□□□□ -0.58
USP28-215ENST00000545608 DDR1Q08345 913 aa11.43□□□□□ -0.58
USP28-215ENST00000545608 CFAP44Q96MT7 982 aa11.43□□□□□ -0.58
USP28-215ENST00000545608 NPC1L1Q9UHC9 1359 aa11.42□□□□□ -0.58
USP28-215ENST00000545608 SOS1Q07889 1333 aaPredicted RBP11.42□□□□□ -0.58
USP28-215ENST00000545608 U2SURPO15042 1029 aaKnown RBP11.42□□□□□ -0.58
USP28-215ENST00000545608 FCHSD2O94868 740 aa11.42□□□□□ -0.58
USP28-215ENST00000545608 TM4SF1P30408 202 aa11.42□□□□□ -0.58
USP28-215ENST00000545608 USPL1Q5W0Q7 1092 aa11.42□□□□□ -0.58
USP28-215ENST00000545608 POLRMTO00411 1230 aaKnown RBP11.41□□□□□ -0.58
USP28-215ENST00000545608 ARHGAP27Q6ZUM4 889 aa11.41□□□□□ -0.58
USP28-215ENST00000545608 IL17REQ8NFR9 667 aa11.41□□□□□ -0.58
USP28-215ENST00000545608 ZBTB1Q9Y2K1 713 aa11.41□□□□□ -0.58
USP28-215ENST00000545608 SCN11AQ9UI33 1791 aa11.41□□□□□ -0.58
USP28-215ENST00000545608 C4AP0C0L4 1744 aa11.4□□□□□ -0.58
USP28-215ENST00000545608 TJP1Q07157 1748 aa11.4□□□□□ -0.58
USP28-215ENST00000545608 COL3A1P02461 1466 aaPredicted RBP11.4□□□□□ -0.58
USP28-215ENST00000545608 MRC1P22897 1456 aa11.4□□□□□ -0.58
USP28-215ENST00000545608 ZPR1O75312 459 aa11.4□□□□□ -0.58
USP28-215ENST00000545608 BCL2L12Q9HB09 334 aa11.4□□□□□ -0.58
USP28-215ENST00000545608 KIAA1551Q9HCM1 1747 aa11.4□□□□□ -0.58
USP28-215ENST00000545608 KCPQ6ZWJ8 1503 aa11.4□□□□□ -0.59
USP28-215ENST00000545608 KIF13BQ9NQT8 1826 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 KIF3CO14782 793 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 CANXP27824 592 aaKnown RBP11.39□□□□□ -0.59
USP28-215ENST00000545608 CHRNA5P30532 468 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 GSE1Q14687 1217 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 NFIXQ14938 502 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 SPRYD3Q8NCJ5 442 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 SPDYE1Q8NFV5 336 aaPredicted RBP11.39□□□□□ -0.59
USP28-215ENST00000545608 PIM2Q9P1W9 311 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 NARFQ9UHQ1 456 aa11.39□□□□□ -0.59
USP28-215ENST00000545608 N4BP2Q86UW6 1770 aaPredicted RBP11.39□□□□□ -0.59
USP28-215ENST00000545608 GNAT3A8MTJ3 354 aa11.38□□□□□ -0.59
USP28-215ENST00000545608 GAS2L2Q8NHY3 880 aa11.38□□□□□ -0.59
USP28-215ENST00000545608 ZNF496Q96IT1 587 aaPredicted RBP11.38□□□□□ -0.59
USP28-215ENST00000545608 PHACTR3Q96KR7 559 aa11.38□□□□□ -0.59
USP28-215ENST00000545608 ADAMTS7Q9UKP4 1686 aa11.37□□□□□ -0.59
USP28-215ENST00000545608 GOLGB1Q14789 3259 aaKnown RBP11.37□□□□□ -0.59
USP28-215ENST00000545608 TEFQ10587 303 aa11.37□□□□□ -0.59
USP28-215ENST00000545608 DALRD3Q5D0E6 543 aaKnown RBP11.37□□□□□ -0.59
USP28-215ENST00000545608 ZNF790Q6PG37 636 aa11.37□□□□□ -0.59
USP28-215ENST00000545608 TTC5Q8N0Z6 440 aa11.37□□□□□ -0.59
USP28-215ENST00000545608 COL15A1P39059 1388 aa11.37□□□□□ -0.59
USP28-215ENST00000545608 KCNQ3O43525 872 aa11.36□□□□□ -0.59
USP28-215ENST00000545608 STARD3NLO95772 234 aa11.36□□□□□ -0.59
USP28-215ENST00000545608 SERPINB2P05120 415 aa11.36□□□□□ -0.59
USP28-215ENST00000545608 PRKAR2BP31323 418 aa11.36□□□□□ -0.59
USP28-215ENST00000545608 EIF5P55010 431 aaKnown RBP11.36□□□□□ -0.59
USP28-215ENST00000545608 C9orf131Q5VYM1 1079 aa11.36□□□□□ -0.59
USP28-215ENST00000545608 RSPH6AQ9H0K4 717 aa11.36□□□□□ -0.59
USP28-215ENST00000545608 HSPA6P17066 643 aa11.35□□□□□ -0.59
USP28-215ENST00000545608 PPP2R1AP30153 589 aa11.35□□□□□ -0.59
USP28-215ENST00000545608 CFAP53Q96M91 514 aa11.35□□□□□ -0.59
USP28-215ENST00000545608 HEG1Q9ULI3 1381 aa11.35□□□□□ -0.59
USP28-215ENST00000545608 CEMIPQ8WUJ3 1361 aa11.34□□□□□ -0.59
USP28-215ENST00000545608 A1BGP04217 495 aa11.34□□□□□ -0.59
USP28-215ENST00000545608 BICDL1Q6ZP65 573 aa11.34□□□□□ -0.59
USP28-215ENST00000545608 TEX13AQ9BXU3 409 aaPredicted RBP11.34□□□□□ -0.59
USP28-215ENST00000545608 NMRK2Q9NPI5 230 aa11.34□□□□□ -0.59
USP28-215ENST00000545608 A0A087WZG4 1122 aa11.33□□□□□ -0.6
USP28-215ENST00000545608 BTBD11A6QL63 1104 aa11.33□□□□□ -0.6
USP28-215ENST00000545608 U2AF1L5P0DN76 240 aaPredicted RBP11.33□□□□□ -0.6
USP28-215ENST00000545608 U2AF1Q01081 240 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP28-215ENST00000545608 TBC1D9BQ66K14 1250 aa11.33□□□□□ -0.6
USP28-215ENST00000545608 FMNL2Q96PY5 1086 aa11.33□□□□□ -0.6
USP28-215ENST00000545608 TBC1D2BQ9UPU7 963 aa11.33□□□□□ -0.6
USP28-215ENST00000545608 NUDCQ9Y266 331 aa11.33□□□□□ -0.6
USP28-215ENST00000545608 IL6STP40189 918 aaPredicted RBP11.32□□□□□ -0.6
USP28-215ENST00000545608 RNF181Q9P0P0 153 aa11.32□□□□□ -0.6
USP28-215ENST00000545608 ZNF330Q9Y3S2 320 aaPredicted RBP11.32□□□□□ -0.6
USP28-215ENST00000545608 USP16Q9Y5T5 823 aa11.32□□□□□ -0.6
USP28-215ENST00000545608 BRCA1P38398 1863 aaKnown RBP11.32□□□□□ -0.6
USP28-215ENST00000545608 CARMIL3Q8ND23 1372 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 PRAMEF22A3QJZ6 481 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 TOMM70O94826 608 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 RASSF7Q02833 373 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 DCTN1Q14203 1278 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 MCM10Q7L590 875 aa11.31□□□□□ -0.6
USP28-215ENST00000545608 C2CD5Q86YS7 1000 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms