RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CCDC7Q96M83 1385 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 SPATS2Q86XZ4 545 aaKnown RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 ZNF318Q5VUA4 2279 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 EIF4G1Q04637 1599 aaKnown RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 EIF5P55010 431 aaKnown RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 KIF4BQ2VIQ3 1234 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 PLPPR3Q6T4P5 718 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 CIB2O75838 187 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 TOP1P11387 765 aaKnown RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 MCM6Q14566 821 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 HDXQ7Z353 690 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 SETDB1Q15047 1291 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 KIF1CO43896 1103 aaKnown RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 KIF5AQ12840 1032 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 STX1AQ16623 288 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 NUP88Q99567 741 aaPredicted RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 NEK4P51957 841 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 CCDC170Q8IYT3 715 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 GMNNO75496 209 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 NPM1P06748 294 aaKnown RBP eCLIP7.11□□□□□ -1.27
VCAN-203ENST00000343200 WWC2Q6AWC2 1192 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 GOLGA1Q92805 767 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 BCL2L13Q9BXK5 485 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 DNAI2Q9GZS0 605 aa7.11□□□□□ -1.27
VCAN-203ENST00000343200 IQCGQ9H095 443 aaKnown RBP7.11□□□□□ -1.27
VCAN-203ENST00000343200 USP47Q96K76 1375 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 CNTLNQ9NXG0 1405 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 PRPF31Q8WWY3 499 aaKnown RBP7.1□□□□□ -1.27
VCAN-203ENST00000343200 SATB2Q9UPW6 733 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 URI1O94763 535 aaPredicted RBP7.1□□□□□ -1.27
VCAN-203ENST00000343200 KRT18P05783 430 aaKnown RBP7.1□□□□□ -1.27
VCAN-203ENST00000343200 JADE2Q9NQC1 790 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 AKNAQ7Z591 1439 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 G3V3G9 751 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 CCDC92Q53HC0 331 aaPredicted RBP7.1□□□□□ -1.27
VCAN-203ENST00000343200 DCAF8Q5TAQ9 597 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 NUF2Q9BZD4 464 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 COG6Q9Y2V7 657 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 SLC8A1P32418 973 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.1□□□□□ -1.27
VCAN-203ENST00000343200 THEGQ9P2T0 379 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 FGFR1OPO95684 399 aaKnown RBP7.1□□□□□ -1.27
VCAN-203ENST00000343200 TANGO6Q9C0B7 1094 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 CTDP1Q9Y5B0 961 aaPredicted RBP7.1□□□□□ -1.27
VCAN-203ENST00000343200 INPP5BP32019 993 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 VPS37DQ86XT2 251 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 VPS18Q9P253 973 aa7.1□□□□□ -1.27
VCAN-203ENST00000343200 DNAJC8O75937 253 aaPredicted RBP7.09□□□□□ -1.27
VCAN-203ENST00000343200 ADCY5O95622 1261 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 MAP4K4O95819 1239 aaPredicted RBP7.09□□□□□ -1.27
VCAN-203ENST00000343200 ZBTB16Q05516 673 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 MAP7D1Q3KQU3 841 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 TRIM7Q9C029 511 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 TTC36A6NLP5 189 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 CPLX4Q7Z7G2 160 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 SKILP12757 684 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 ALDH3A1P30838 453 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 CCDC172P0C7W6 258 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 EPSTI1Q96J88 318 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 TSNARE1Q96NA8 513 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 HOMER2Q9NSB8 354 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 SERPINA10Q9UK55 444 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 COG7P83436 770 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 CCDC40Q4G0X9 1142 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 TRIM22Q8IYM9 498 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 CCDC144AA2RUR9 1427 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 CEBPZQ03701 1054 aaKnown RBP7.09□□□□□ -1.27
VCAN-203ENST00000343200 ATRIPQ8WXE1 791 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 PLVAPQ9BX97 442 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 ANO10Q9NW15 660 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 TPX2Q9ULW0 747 aaKnown RBP7.09□□□□□ -1.27
VCAN-203ENST00000343200 ASXL3Q9C0F0 2248 aa7.09□□□□□ -1.27
VCAN-203ENST00000343200 RRBP1Q9P2E9 1410 aaKnown RBP7.09□□□□□ -1.28
VCAN-203ENST00000343200 VCX3AQ9NNX9 186 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 DIAPH1O60610 1272 aaKnown RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 CCDC129Q6ZRS4 1044 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 LRRC45Q96CN5 670 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 PPFIA3O75145 1194 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 SLC3A2P08195 630 aaKnown RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 PSMC4P43686 418 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 FKBP15Q5T1M5 1219 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 RASEFQ8IZ41 740 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 SCAND2PQ9GZW5 306 aaPredicted RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 RUFY3Q7L099 469 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 PPP1R12CQ9BZL4 782 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 CYP46A1Q9Y6A2 500 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 TPD52P55327 224 aaPredicted RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 IFI16Q16666 785 aaKnown RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 MPNDQ8N594 471 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 CEP131Q9UPN4 1083 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 NUP214P35658 2090 aaPredicted RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 YEATS4O95619 227 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 RNF10Q8N5U6 811 aaKnown RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 AFAP1L1Q8TED9 768 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 ZNF330Q9Y3S2 320 aaPredicted RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 PRC1O43663 620 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 JAKMIP2Q96AA8 810 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 MRFAP1L1Q96HT8 127 aa7.08□□□□□ -1.28
VCAN-203ENST00000343200 RAB3IPQ96QF0 476 aaPredicted RBP7.08□□□□□ -1.28
VCAN-203ENST00000343200 MGEA5O60502 916 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms