RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 EFR3AQ14156 821 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 IL23RQ5VWK5 629 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PAPD7Q5XG87 772 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 CES4AQ5XG92 561 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 HPS6Q86YV9 775 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 GHDCQ8N2G8 530 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 GLIS3Q8NEA6 775 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 CMASQ8NFW8 434 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 FGF14Q92915 247 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 KIAA1191Q96A73 305 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 UGT2B28Q9BY64 529 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 FGF21Q9NSA1 209 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 FARSBQ9NSD9 589 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 STARD5Q9NSY2 213 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 FARSAQ9Y285 508 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ATE1O95260 518 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 S1PR4O95977 384 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 CD44P16070 742 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 PGCP20142 388 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 OGNP20774 298 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC1A6P48664 564 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 ERFP50548 548 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 BNIP3Q12983 259 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 SCCPDHQ8NBX0 429 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 NTAN1Q96AB6 310 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 MTERF3Q96E29 417 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 BOD1Q96IK1 185 aa8.89□□□□□ -0.99
LIMCH1-202ENST00000381753 DUOX1Q9NRD9 1551 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 LILRB5O75023 590 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 DDAH2O95865 285 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 FOXN2P32314 431 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ACADVLP49748 655 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 EEF1A1P68104 462 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ST3GAL4Q11206 333 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 MERTKQ12866 999 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 TAZQ16635 292 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 NDNFQ8TB73 568 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 DDIT4LQ96D03 193 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 THAP11Q96EK4 314 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 OLFM1Q99784 485 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 CADM1Q9BY67 442 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ST6GALNAC4Q9H4F1 302 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 PRSS16Q9NQE7 514 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SPHK1Q9NYA1 384 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF226Q9NYT6 803 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 FAM208AQ9UK61 1670 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 C2orf92A0A1B0GVN3 265 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 hCG_1809904A0A1W2PP81 198 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A1W2PPE2 198 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A1W2PR64 198 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A1W2PRV1 198 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 MBLAC1A4D2B0 266 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SAC3D1A6NKF1 404 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 HLA-DQB2P05538 268 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 BMP8BP34820 402 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 EIF2DP41214 584 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 KIR3DL1P43629 444 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 MECP2P51608 486 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 AP1S2P56377 157 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 FMO1Q01740 532 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 MEF2AQ02078 507 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SERTAD2Q14140 314 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 MYBPC3Q14896 1274 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 FAM109BQ6ICB4 259 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ZER1Q7Z7L7 766 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 TSC22D3Q99576 134 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC30A2Q9BRI3 323 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 TCP11X1B4DZS4 312 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 BIRC5O15392 142 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SRCP12931 536 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 PTDSS1P48651 473 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SHC2P98077 582 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 DNAJC3Q13217 504 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 NDUFAF6Q330K2 333 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 UXS1Q8NBZ7 420 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 DNAJC19Q96DA6 116 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 CPNE2Q96FN4 548 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 CRISPLD2Q9H0B8 497 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 HIPK2Q9H2X6 1198 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SMURF2Q9HAU4 748 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 OLAHQ9NV23 265 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 K7ERQ8 282 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 AGTR2P50052 363 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 RPS13P62277 151 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 POU6F2P78424 691 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 GSTM4Q03013 218 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC18A2Q05940 514 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SERINC3Q13530 473 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 SYT16Q17RD7 645 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 LACTB2Q53H82 288 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 KDELC1Q6UW63 502 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 LARP4Q71RC2 724 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 ARPINQ7Z6K5 226 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 IQCF2Q8IXL9 164 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 PIH1D2Q8WWB5 315 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 TRMT2BQ96GJ1 504 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 CHD4Q14839 1912 aa8.88□□□□□ -0.99
LIMCH1-202ENST00000381753 H3BQF6 201 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 H7C0S8 307 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms