RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 RPS15AP62244 130 aaKnown RBP14.34□□□□□ -0.11
NUP54-213ENST00000513352 REEP5Q00765 189 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 MC2RQ01718 297 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 CLCQ05315 142 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 DOC2AQ14183 400 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 PAGE2BQ5JRK9 111 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 ZCCHC23Q6ZST2 131 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 RNF44Q7L0R7 432 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 GPR135Q8IZ08 494 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 DNAJC22Q8N4W6 341 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 ZNF740Q8NDX6 193 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 PTCD3Q96EY7 689 aaKnown RBP14.34□□□□□ -0.11
NUP54-213ENST00000513352 DRC3Q9H069 523 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 SPNS1Q9H2V7 528 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 APMAPQ9HDC9 416 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 KLK4Q9Y5K2 254 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 A0A1W2PNU3 283 aaPredicted RBP14.33□□□□□ -0.12
NUP54-213ENST00000513352 TRBC2A0A5B9 178 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 OR7A17O14581 309 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 TNFSF15O95150 251 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 MLYCDO95822 493 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 OTCP00480 354 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 PCNAP12004 261 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 CXCR2P25025 360 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 RBMS1P29558 406 aaKnown RBP14.33□□□□□ -0.12
NUP54-213ENST00000513352 BCL6P41182 706 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 ITGA1P56199 1179 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 CYP4F2P78329 520 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 HIST2H2ACQ16777 129 aaPredicted RBP14.33□□□□□ -0.12
NUP54-213ENST00000513352 HIST2H2AA3Q6FI13 130 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 FRMPD2BQ6IN97 320 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 PPP1R3BQ86XI6 285 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 OR52B6Q8NGF0 335 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 CCT6BQ92526 530 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 USP7Q93009 1102 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 CDK15Q96Q40 435 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 EFCAB11Q9BUY7 163 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 C1QTNF3Q9BXJ4 246 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 SLC7A5P2Q9GIP4 190 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 EHD1Q9H4M9 534 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 POLR1BQ9H9Y6 1135 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 ZBTB26Q9HCK0 441 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 GEMIN8Q9NWZ8 242 aaKnown RBP14.33□□□□□ -0.12
NUP54-213ENST00000513352 SERTAD3Q9UJW9 196 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 STK38LQ9Y2H1 464 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 AK5Q9Y6K8 562 aa14.33□□□□□ -0.12
NUP54-213ENST00000513352 LOC105369274A0A096LPK9 316 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 LOC102723532A0A0G2JNH3 316 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 B4E171 279 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 H0YGG7 62 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 HCRTR1O43613 425 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 PRAMEF4O60810 478 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 OR2B3O76000 313 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 ADRB1P08588 477 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 TSPAN7P41732 249 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 CCR10P46092 362 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 RAB15P59190 212 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 ARF3P61204 181 aaPredicted RBP14.32□□□□□ -0.12
NUP54-213ENST00000513352 PPP2R2AP63151 447 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 LCP2Q13094 533 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 LAPTM5Q13571 262 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 COL9A2Q14055 689 aaPredicted RBP14.32□□□□□ -0.12
NUP54-213ENST00000513352 CHI3L2Q15782 390 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 DCAF12Q5T6F0 453 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 TMEM164Q5U3C3 297 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 PRAMEF9Q5VWM5 478 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 TTC19Q6DKK2 380 aaPredicted RBP14.32□□□□□ -0.12
NUP54-213ENST00000513352 FBXO42Q6P3S6 717 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 TMIGD1Q6UXZ0 262 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 CEACAM20Q6UY09 585 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 FRMD7Q6ZUT3 714 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 GPRIN3Q6ZVF9 776 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 MILR1Q7Z6M3 343 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 TMEM126BQ8IUX1 230 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 OR4N4Q8N0Y3 316 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 BMPERQ8N8U9 685 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 OR4K1Q8NGD4 311 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 OR1L3Q8NH93 324 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 MDM1Q8TC05 714 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 ZNF501Q96CX3 271 aaPredicted RBP14.32□□□□□ -0.12
NUP54-213ENST00000513352 TAAR9Q96RI9 348 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 GATA5Q9BWX5 397 aaPredicted RBP14.32□□□□□ -0.12
NUP54-213ENST00000513352 NLNQ9BYT8 704 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 SHCBP1LQ9BZQ2 653 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 CHRNA10Q9GZZ6 450 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 GSTO2Q9H4Y5 243 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 MED4Q9NPJ6 270 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 STARD5Q9NSY2 213 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 PILRAQ9UKJ1 303 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 RNF11Q9Y3C5 154 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 DCHS1Q96JQ0 3298 aa14.32□□□□□ -0.12
NUP54-213ENST00000513352 ANKDD1BA6NHY2 528 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 PPP6CO00743 305 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 FFAR3O14843 346 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 BIRC5O15392 142 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 GPR42O15529 346 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 LCMT2O60294 686 aaKnown RBP14.31□□□□□ -0.12
NUP54-213ENST00000513352 CRCPO75575 148 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 OR4F21O95013 312 aa14.31□□□□□ -0.12
NUP54-213ENST00000513352 CLDN9O95484 217 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms