RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 UBXN1Q04323 297 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 MAD2L1Q13257 205 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 NR1D2Q14995 579 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 C2orf76Q3KRA6 126 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 PPP6R3Q5H9R7 873 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 HES3Q5TGS1 186 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 SFMBT2Q5VUG0 894 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 ZNF793Q6ZN11 406 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 CSMD2Q7Z408 3487 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 NOXA1Q86UR1 476 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 HAPLN4Q86UW8 402 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 KDM1BQ8NB78 822 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 GRK7Q8WTQ7 553 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 TEKT4Q8WW24 435 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 EVPLQ92817 2033 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 ERLEC1Q96DZ1 483 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 SPACA9Q96E40 222 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 FAM20AQ96MK3 541 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 CDRT15Q96T59 188 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 AKAP9Q99996 3911 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 GPATCH1Q9BRR8 931 aaKnown RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 RIOK1Q9BRS2 568 aaKnown RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 LHPPQ9H008 270 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 KLK15Q9H2R5 256 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 NOL11Q9H8H0 719 aaKnown RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 MKKSQ9NPJ1 570 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 IL17RBQ9NRM6 502 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 THSD1Q9NS62 852 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 TBC1D13Q9NVG8 400 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 FANCIQ9NVI1 1328 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 ADPRHL2Q9NX46 363 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 HAO2Q9NYQ3 351 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 GTSE1Q9NYZ3 720 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 PRG3Q9Y2Y8 225 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 POMT1Q9Y6A1 747 aa4.59□□□□□ -1.67
HMGB1P23-201ENST00000518743 PKD1L1Q8TDX9 2849 aa4.59□□□□□ -1.68
HMGB1P23-201ENST00000518743 TLN2Q9Y4G6 2542 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 TRBV5-3A0A0A0MS03 114 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 C1orf226A1L170 272 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 MBLAC1A4D2B0 266 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 HTR3EA5X5Y0 456 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 LINC01548A6NM66 108 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 STMND1H3BQB6 276 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 VCYO14598 125 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 IFIT3O14879 490 aaKnown RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 AP5Z1O43299 807 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 RGS11O94810 467 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 ITGB6P18564 788 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 HSPA4P34932 840 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 ATP6V1E1P36543 226 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 HNF4AP41235 474 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 CXCR3P49682 368 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 NPY4RP50391 375 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 SUOXP51687 545 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 ELLP55199 621 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 YWHAHQ04917 246 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 GAD2Q05329 585 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 FOXF2Q12947 444 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 WDR43Q15061 677 aaKnown RBP eCLIP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 LINC00303Q3SY05 128 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 TTC31Q49AM3 519 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 PIK3CD-AS1Q5SR53 167 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 MARCH8Q5T0T0 291 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 C12orf60Q5U649 245 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 FRG2Q64ET8 278 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 PLA2G4FQ68DD2 849 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 CAVIN1Q6NZI2 390 aaKnown RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 IYDQ6PHW0 289 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 TRAT1Q6PIZ9 186 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 MOXD1Q6UVY6 613 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 FAM43BQ6ZT52 329 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 LDB1Q86U70 411 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 CCDC190Q86UF4 302 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 TIGD4Q8IY51 512 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 MB21D2Q8IYB1 491 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 GALNT16Q8N428 558 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 SPATA6LQ8N4H0 392 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 Q8NFD4 153 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 OR1J2Q8NGS2 313 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 EXD1Q8NHP7 514 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 CFAP61Q8NHU2 1237 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 ZNF564Q8TBZ8 553 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 URGCPQ8TCY9 931 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 HASPINQ8TF76 798 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 SMARCD2Q92925 531 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 B3GALT6Q96L58 329 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 RMDN2Q96LZ7 410 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 ZNF578Q96N58 590 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 MGME1Q9BQP7 344 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 MLPHQ9BV36 600 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 NPFFR1Q9GZQ6 430 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 GAREM1Q9H706 876 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 TRPV4Q9HBA0 871 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 PAG1Q9NWQ8 432 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 TRMT1Q9NXH9 659 aaKnown RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 DDX43Q9NXZ2 648 aaKnown RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 DONSONQ9NYP3 566 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 LARSQ9P2J5 1176 aaKnown RBP4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 ACSL5Q9ULC5 683 aa4.58□□□□□ -1.68
HMGB1P23-201ENST00000518743 LIPT1Q9Y234 373 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms