RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CACHD1Q5VU97 1274 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 PRAMEF13Q5VWM6 474 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 ATG9BQ674R7 924 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 DUS1LQ6P1R4 473 aaKnown RBP17.54■□□□□ 0.4
VIM-201ENST00000224237 HACD2Q6Y1H2 254 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 BNC2Q6ZN30 1099 aaPredicted RBP17.54■□□□□ 0.4
VIM-201ENST00000224237 FAM160A2Q8N612 972 aaPredicted RBP17.54■□□□□ 0.4
VIM-201ENST00000224237 PROKR1Q8TCW9 393 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 RLN3Q8WXF3 142 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 REPS1Q96D71 796 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 SPDL1Q96EA4 605 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 FERD3LQ96RJ6 166 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 HAUS8Q9BT25 410 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 MENTQ9BUN1 341 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 EFCAB11Q9BUY7 163 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 IMP3Q9NV31 184 aaKnown RBP17.54■□□□□ 0.4
VIM-201ENST00000224237 TMED5Q9Y3A6 229 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 DYTNA2CJ06 578 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 HSD3B1P14060 373 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 CAPN3P20807 821 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 HSD3B2P26439 372 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 PXNP49023 591 aaPredicted RBP17.54■□□□□ 0.4
VIM-201ENST00000224237 MTTPP55157 894 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 CLCA4Q14CN2 919 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 PAGE2BQ5JRK9 111 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 C10orf62Q5T681 223 aaPredicted RBP17.54■□□□□ 0.4
VIM-201ENST00000224237 ABI3BPQ7Z7G0 1075 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 FBXW8Q8N3Y1 598 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 ROPN1LQ96C74 230 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 BIRC7Q96CA5 298 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 CMTM7Q96FZ5 175 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 TEX37Q96LM6 180 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 GPR174Q9BXC1 333 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 TBC1D17Q9HA65 648 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 BRF2Q9HAW0 419 aa17.54■□□□□ 0.4
VIM-201ENST00000224237 A0A1W2PP18 115 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 FAM234BA2RU67 622 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 PCSK2P16519 638 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 JAK1P23458 1154 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 VARSP26640 1264 aaKnown RBP17.53■□□□□ 0.4
VIM-201ENST00000224237 POLR2JP52435 117 aaKnown RBP17.53■□□□□ 0.4
VIM-201ENST00000224237 KPNB1Q14974 876 aaKnown RBP17.53■□□□□ 0.4
VIM-201ENST00000224237 KIAA0040Q15053 153 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 VPS26BQ4G0F5 336 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 SWT1Q5T5J6 900 aaKnown RBP17.53■□□□□ 0.4
VIM-201ENST00000224237 MED27Q6P2C8 311 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 Q6ZSR6 202 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 LPCAT2Q7L5N7 544 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 LMNTD1Q8N9Z9 388 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 WDR60Q8WVS4 1066 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 RAB11FIP5Q9BXF6 653 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 PCBD2Q9H0N5 130 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 MVB12BQ9H7P6 319 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 HEBP2Q9Y5Z4 205 aa17.53■□□□□ 0.4
VIM-201ENST00000224237 C19orf67A6NJJ6 358 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 C9JVG2 144 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 ANKRD28O15084 1053 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 ENTPD5O75356 428 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 C1GALT1C1LP0DN25 315 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 ACPPP15309 386 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 MAPK1P28482 360 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 ZFP36L2P47974 494 aaKnown RBP17.52■□□□□ 0.4
VIM-201ENST00000224237 LAPTM5Q13571 262 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 KRT33BQ14525 404 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 CATSPEREQ5SY80 951 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 C1orf146Q5VVC0 180 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 ICE2Q659A1 982 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 RD3Q7Z3Z2 195 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 OR7G3Q8NG95 312 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 SMPDL3AQ92484 453 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 TSACCQ96A04 125 aaPredicted RBP17.52■□□□□ 0.4
VIM-201ENST00000224237 CDRT15Q96T59 188 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 ACTL8Q9H568 366 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 SLC52A3Q9NQ40 469 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 PRDM8Q9NQV8 689 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 SPATA6Q9NWH7 488 aaPredicted RBP17.52■□□□□ 0.4
VIM-201ENST00000224237 SH2B3Q9UQQ2 575 aa17.52■□□□□ 0.4
VIM-201ENST00000224237 IGHV1OR15-9A0A0B4J2B8 117 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 CCDC154A6NI56 674 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 STK25O00506 426 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 CFLARO15519 480 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 PDE5AO76074 875 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 SRP54P61011 504 aaKnown RBP17.52■□□□□ 0.39
VIM-201ENST00000224237 PSME3P61289 254 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 SLBPQ14493 270 aaKnown RBP eCLIP17.52■□□□□ 0.39
VIM-201ENST00000224237 TCEA2Q15560 299 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 HIST2H2ACQ16777 129 aaPredicted RBP17.52■□□□□ 0.39
VIM-201ENST00000224237 HIST2H2AA3Q6FI13 130 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 NXPE4Q6UWF7 544 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 WASH2PQ6VEQ5 465 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 RETREG3Q86VR2 466 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 FAM9CQ8IZT9 166 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 LIX1Q8N485 282 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 METTL2AQ96IZ6 378 aaKnown RBP17.52■□□□□ 0.39
VIM-201ENST00000224237 MTERF1Q99551 399 aaKnown RBP17.52■□□□□ 0.39
VIM-201ENST00000224237 CAAP1Q9H8G2 361 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 WASH6PQ9NQA3 447 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 VPS29Q9UBQ0 182 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 PCDHGA7Q9Y5G6 932 aa17.52■□□□□ 0.39
VIM-201ENST00000224237 KDM1AO60341 852 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms