RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 KLHL42Q9P2K6 505 aa17.05■□□□□ 0.32
HDDC3-201ENST00000330334 DHCR7Q9UBM7 475 aaKnown RBP17.05■□□□□ 0.32
HDDC3-201ENST00000330334 GPN3Q9UHW5 284 aaPredicted RBP17.05■□□□□ 0.32
HDDC3-201ENST00000330334 G3BP2Q9UN86 482 aaKnown RBP17.05■□□□□ 0.32
HDDC3-201ENST00000330334 ZNF451Q9Y4E5 1061 aa17.05■□□□□ 0.32
HDDC3-201ENST00000330334 MED13Q9UHV7 2174 aa17.05■□□□□ 0.32
HDDC3-201ENST00000330334 LRRK2Q5S007 2527 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 GOLGA8KD6RF30 607 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 GOLGA8TH3BQL2 631 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 SRPX2O60687 465 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-201ENST00000330334 CTSBP07858 339 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 COILP38432 576 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-201ENST00000330334 CHAF1BQ13112 559 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 IGFBP7Q16270 282 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 CYP2A13Q16696 494 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 ANKRD20A4Q4UJ75 823 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 C1orf189Q5VU69 101 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 MLIPQ5VWP3 458 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 ANKRD22Q5VYY1 191 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 FCRL6Q6DN72 434 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 CENPUQ71F23 418 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 FAM20CQ8IXL6 584 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 C2orf73Q8N5S3 287 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-201ENST00000330334 SKA2Q8WVK7 121 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-201ENST00000330334 SPATA7Q9P0W8 599 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 SAMD15Q9P1V8 674 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 NDOR1Q9UHB4 597 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 NFS1Q9Y697 457 aa17.04■□□□□ 0.32
HDDC3-201ENST00000330334 PRRC2CQ9Y520 2896 aaKnown RBP17.03■□□□□ 0.32
HDDC3-201ENST00000330334 FITM1A5D6W6 292 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 ALBP02768 609 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 PIM1P11309 404 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-201ENST00000330334 PKMP14618 531 aaKnown RBP17.03■□□□□ 0.32
HDDC3-201ENST00000330334 CHRM3P20309 590 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 GRIA3P42263 894 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 MAGEA3P43357 314 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 VPS41P49754 854 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 ATP1A4Q13733 1029 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 GRM7Q14831 915 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 NAA25Q14CX7 972 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 CASC4Q6P4E1 433 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 CCDC137Q6PK04 289 aaKnown RBP17.03■□□□□ 0.32
HDDC3-201ENST00000330334 FDCSPQ8NFU4 85 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 ACTRT1Q8TDG2 376 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 FKBP10Q96AY3 582 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 MS4A14Q96JA4 679 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 FER1L6-AS2Q96M78 137 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 SMAD5Q99717 465 aaKnown RBP17.03■□□□□ 0.32
HDDC3-201ENST00000330334 IRAK4Q9NWZ3 460 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 IL1RAPL1Q9NZN1 696 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 CIDEBQ9UHD4 219 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 KLHL20Q9Y2M5 609 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 CRYL1Q9Y2S2 319 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 PTRH2Q9Y3E5 179 aaKnown RBP17.03■□□□□ 0.32
HDDC3-201ENST00000330334 PTPN13Q12923 2485 aa17.03■□□□□ 0.32
HDDC3-201ENST00000330334 SPENQ96T58 3664 aaKnown RBP17.02■□□□□ 0.32
HDDC3-201ENST00000330334 RP1L1Q8IWN7 2480 aaPredicted RBP17.02■□□□□ 0.32
HDDC3-201ENST00000330334 A0A1B0GX78 115 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 CLEC18AA5D8T8 446 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 PGRMC1O00264 195 aaKnown RBP17.02■□□□□ 0.32
HDDC3-201ENST00000330334 KLHL41O60662 606 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 NIPSNAP2O75323 286 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 ERGP11308 486 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 FOLR3P41439 243 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 SOX8P57073 446 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 DHX34Q14147 1143 aaKnown RBP17.02■□□□□ 0.32
HDDC3-201ENST00000330334 ARHGAP19Q14CB8 494 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 FAM214AQ32MH5 1076 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 CCSMST1Q4G0I0 132 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 CLEC18BQ6UXF7 455 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 NEK10Q6ZWH5 1172 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 OVCH1Q7RTY7 1134 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 MRGPREQ86SM8 312 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 LMNTD2Q8IXW0 634 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 CLEC18CQ8NCF0 446 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 OR2L3Q8NG85 312 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 OR2A1Q8NGT9 310 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 SERPINB12Q96P63 405 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 SLC26A1Q9H2B4 701 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 WDR54Q9H977 334 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 SLC22A11Q9NSA0 550 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 C5AR2Q9P296 337 aa17.02■□□□□ 0.32
HDDC3-201ENST00000330334 ZCWPW2A0A1B0GU75 182 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 A0A1W2PPV9 198 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 MYO1CO00159 1063 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 PEX12O00623 359 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 CES2O00748 559 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 DSCR3O14972 297 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 ZNF185O15231 689 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 DPM1O60762 260 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 CNOT3O75175 753 aaKnown RBP17.01■□□□□ 0.31
HDDC3-201ENST00000330334 PSIP1O75475 530 aaKnown RBP17.01■□□□□ 0.31
HDDC3-201ENST00000330334 SNRNP200O75643 2136 aaKnown RBP17.01■□□□□ 0.31
HDDC3-201ENST00000330334 ALAS2P22557 587 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 OTX2P32243 289 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 HSD17B2P37059 387 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 BDKRB1P46663 353 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 FNTAP49354 379 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 CLCN7P51798 805 aa17.01■□□□□ 0.31
HDDC3-201ENST00000330334 CNSTQ6PJW8 725 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms