RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 CASP6P55212 293 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 GTF2BQ00403 316 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 SIGLEC14Q08ET2 396 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 KIF5AQ12840 1032 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 GRSF1Q12849 480 aaKnown RBP eCLIP3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 ALCAMQ13740 583 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 FAM69BQ5VUD6 431 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 ATL3Q6DD88 541 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 SLC8B1Q6J4K2 584 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZNF720Q7Z2F6 126 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 SLC46A3Q7Z3Q1 461 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 HAUS6Q7Z4H7 955 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 GPBP1Q86WP2 473 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 CD302Q8IX05 232 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 UBALD2Q8IYN6 164 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 PGBD5Q8N414 524 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 LINC00301Q8NCQ3 95 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 NAXEQ8NCW5 288 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 LNX1Q8TBB1 728 aaPredicted RBP3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 RAD54LQ92698 747 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 DNAJC19Q96DA6 116 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 EPSTI1Q96J88 318 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 NR1H4Q96RI1 486 aaPredicted RBP3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 USP28Q96RU2 1077 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 TCHPQ9BT92 498 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 KIFC3Q9BVG8 833 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 APOL6Q9BWW8 343 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 STRA6Q9BX79 667 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 CXCL16Q9H2A7 254 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 PARVGQ9HBI0 331 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 POLD4Q9HCU8 107 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 BPIFA1Q9NP55 256 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 OLFML3Q9NRN5 406 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 MTRRQ9UBK8 725 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 MUTYHQ9UIF7 546 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 FBXW11Q9UKB1 542 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 CAMK2AQ9UQM7 478 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 TMEM98Q9Y2Y6 226 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 CLIC4Q9Y696 253 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 STYXL1Q9Y6J8 313 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZFP37Q9Y6Q3 630 aaPredicted RBP3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 SCINQ9Y6U3 715 aa3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 RIF1Q5UIP0 2472 aaKnown RBP3.61□□□□□ -1.83
CKS1BP3-201ENST00000600888 HELZP42694 1942 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 TICRRQ7Z2Z1 1910 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 FAM186AA6NE01 2351 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ARHGEF37A1IGU5 675 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CPED1A4D0V7 1026 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CASTOR2A6NHX0 329 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 SRRM3A6NNA2 597 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 C2CD4DB7Z1M9 353 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ACOT8O14734 319 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 OGTO15294 1046 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZIC3O60481 467 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 B3GAT3O94766 335 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 SEC31AO94979 1220 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 YEATS4O95619 227 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZBTB11O95625 1053 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 UBL4AP11441 157 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 FGF3P11487 239 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 GAP43P17677 238 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CD58P19256 250 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 EPHA8P29322 1005 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 MARCKSP29966 332 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 HNRNPH1P31943 449 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CA8P35219 290 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 COMPP49747 757 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ART1P52961 327 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 TUBA1BP68363 451 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 FOXD4Q12950 439 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 NFATC4Q14934 902 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 KARSQ15046 597 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZRSR1Q15695 479 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 EFNB3Q15768 340 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 PSMD5Q16401 504 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ASIC2Q16515 512 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 GSTA3Q16772 222 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 RARS2Q5T160 578 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 TPGS2Q68CL5 300 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 SLC39A4Q6P5W5 647 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 PRSS55Q6UWB4 352 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CRELD2Q6UXH1 353 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CCDC73Q6ZRK6 1079 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CREB3L2Q70SY1 520 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 LINGO2Q7L985 606 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 R3HCC1LQ7Z5L2 792 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZC3HC1Q86WB0 502 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 SLC35F3Q8IY50 421 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 TDRD5Q8NAT2 981 aaKnown RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 SCCPDHQ8NBX0 429 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZNF114Q8NC26 417 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 BEST2Q8NFU1 509 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 CADM4Q8NFZ8 388 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZNF461Q8TAF7 563 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 LMO3Q8TAP4 145 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZNF707Q96C28 371 aaPredicted RBP3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 SAAL1Q96ER3 474 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 RPGRIP1Q96KN7 1286 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 PPM1MQ96MI6 270 aa3.6□□□□□ -1.83
CKS1BP3-201ENST00000600888 ZNF396Q96N95 335 aaPredicted RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms