RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 SCNN1DP51172 638 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 WDR44Q5JSH3 913 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 CFAP70Q5T0N1 1121 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 TAS1R3Q7RTX0 852 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 IRF7Q92985 503 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 STK17AQ9UEE5 414 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 HRH3Q9Y5N1 445 aa6.23□□□□□ -1.41
USP28-210ENST00000542033 SLC35F4A4IF30 521 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 H3BM21 787 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 PPFIA3O75145 1194 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 LARGE2Q8N3Y3 721 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 OGFOD1Q8N543 542 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 NBPF15Q8N660 670 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 CCDC155Q8N6L0 562 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 VRTNQ9H8Y1 702 aa6.22□□□□□ -1.41
USP28-210ENST00000542033 DNAAF2Q9NVR5 837 aaKnown RBP6.22□□□□□ -1.41
USP28-210ENST00000542033 LOC100996750A0A140TA64 210 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 RHOQP17081 205 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 RASA1P20936 1047 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 SMTNP53814 917 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 INSM1Q01101 510 aaPredicted RBP6.21□□□□□ -1.42
USP28-210ENST00000542033 POU4F2Q12837 409 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 NFX1Q12986 1120 aaKnown RBP6.21□□□□□ -1.42
USP28-210ENST00000542033 CCDC102BQ68D86 513 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 NBPF10Q6P3W6 841 aaKnown RBP6.21□□□□□ -1.42
USP28-210ENST00000542033 LARP1Q6PKG0 1096 aaKnown RBP6.21□□□□□ -1.42
USP28-210ENST00000542033 RHBDD1Q8TEB9 315 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 SLC4A9Q96Q91 983 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 KRTAP4-6Q9BYQ5 205 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 FHDC1Q9C0D6 1143 aaPredicted RBP6.21□□□□□ -1.42
USP28-210ENST00000542033 SERTAD1Q9UHV2 236 aa6.21□□□□□ -1.42
USP28-210ENST00000542033 TMEM229AB2RXF0 380 aa6.2□□□□□ -1.42
USP28-210ENST00000542033 PPARGC1BQ86YN6 1023 aaKnown RBP6.2□□□□□ -1.42
USP28-210ENST00000542033 TPCN2Q8NHX9 752 aa6.2□□□□□ -1.42
USP28-210ENST00000542033 TIMMDC1Q9NPL8 285 aa6.2□□□□□ -1.42
USP28-210ENST00000542033 DYRK1BQ9Y463 629 aa6.2□□□□□ -1.42
USP28-210ENST00000542033 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.19□□□□□ -1.42
USP28-210ENST00000542033 WIPF1O43516 503 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 STAU1O95793 577 aaKnown RBP6.19□□□□□ -1.42
USP28-210ENST00000542033 ITGA6P23229 1130 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 VEGFBP49765 207 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 CLDN10P78369 228 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 CDCA8Q53HL2 280 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 KANK4Q5T7N3 995 aaPredicted RBP6.19□□□□□ -1.42
USP28-210ENST00000542033 SIX5Q8N196 739 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 PBXIP1Q96AQ6 731 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 GMCL1Q96IK5 515 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 NIFKQ9BYG3 293 aaKnown RBP6.19□□□□□ -1.42
USP28-210ENST00000542033 ZNF358Q9NW07 568 aa6.19□□□□□ -1.42
USP28-210ENST00000542033 SENP3-EIF4A1A0A087X0R7 540 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 A0A1B0GTH6 734 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 A6NJY4 79 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 FAM196BA6NMK8 535 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 H7C1W4 665 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 M0R2N6 131 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 CDK2AP1O14519 115 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 VSIG8P0DPA2 414 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 MTFR1Q15390 333 aa6.18□□□□□ -1.42
USP28-210ENST00000542033 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.18□□□□□ -1.42
USP28-210ENST00000542033 ZNF594Q96JF6 807 aaPredicted RBP6.18□□□□□ -1.42
USP28-210ENST00000542033 CDC14CA4D256 554 aa6.17□□□□□ -1.42
USP28-210ENST00000542033 ZBTB7BO15156 539 aaPredicted RBP6.17□□□□□ -1.42
USP28-210ENST00000542033 PPP1R15AO75807 674 aaPredicted RBP6.17□□□□□ -1.42
USP28-210ENST00000542033 F11P03951 625 aa6.17□□□□□ -1.42
USP28-210ENST00000542033 SEC13P55735 322 aa6.17□□□□□ -1.42
USP28-210ENST00000542033 C4orf17Q53FE4 359 aa6.17□□□□□ -1.42
USP28-210ENST00000542033 SV2AQ7L0J3 742 aa6.17□□□□□ -1.42
USP28-210ENST00000542033 NANOS1Q8WY41 292 aaKnown RBP6.17□□□□□ -1.42
USP28-210ENST00000542033 GAS2L1Q99501 681 aaPredicted RBP6.17□□□□□ -1.42
USP28-210ENST00000542033 KIAA1024Q9UPX6 916 aa6.17□□□□□ -1.42
USP28-210ENST00000542033 ACIN1Q9UKV3 1341 aaKnown RBP6.17□□□□□ -1.42
USP28-210ENST00000542033 USP17L15C9J2P7 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L10C9JJH3 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L13C9JLJ4 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L12C9JPN9 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L11C9JVI0 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L21D6R901 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L18D6R9N7 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L22D6RA61 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L17D6RBQ6 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L19D6RCP7 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L20D6RJB6 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 PHKA2P46019 1235 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 USP17L24Q0WX57 530 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 NBPF1Q3BBV0 1214 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 FOXR1Q6PIV2 292 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 RIPOR1Q6ZS17 1223 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 SCHIP1Q9P0W5 487 aaPredicted RBP6.16□□□□□ -1.42
USP28-210ENST00000542033 CHMP3Q9Y3E7 222 aa6.16□□□□□ -1.42
USP28-210ENST00000542033 CSB-PGBD3P0DP91 1061 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 PLA2G4AP47712 749 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 PTK7Q13308 1070 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 LBRQ14739 615 aaKnown RBP6.15□□□□□ -1.42
USP28-210ENST00000542033 CRTC2Q53ET0 693 aaPredicted RBP6.15□□□□□ -1.42
USP28-210ENST00000542033 TRIM22Q8IYM9 498 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 PGBD3Q8N328 593 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 C1orf216Q8TAB5 229 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 CABP1Q9NZU7 370 aa6.15□□□□□ -1.42
USP28-210ENST00000542033 TATP17735 454 aaPredicted RBP6.14□□□□□ -1.43
USP28-210ENST00000542033 SRPK2P78362 688 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms