RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 SMC2O95347 1197 aa19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 DNAAF4Q8WXU2 420 aa19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 JAKMIP1Q96N16 626 aaKnown RBP19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 C14orf93Q9H972 538 aaKnown RBP19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 NCOA1Q15788 1441 aa19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 MKNK2Q9HBH9 465 aa19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 DCTN1Q14203 1278 aa19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 EXOC6BQ9Y2D4 811 aa19.16■□□□□ 0.66
PCDHA3-201ENST00000522353 TMEM57Q8N5G2 664 aa19.15■□□□□ 0.66
PCDHA3-201ENST00000522353 NSD2O96028 1365 aa19.15■□□□□ 0.66
PCDHA3-201ENST00000522353 CAVIN1Q6NZI2 390 aaKnown RBP19.15■□□□□ 0.66
PCDHA3-201ENST00000522353 UBAP1LF5GYI3 381 aa19.15■□□□□ 0.66
PCDHA3-201ENST00000522353 DHX8Q14562 1220 aaKnown RBP19.15■□□□□ 0.66
PCDHA3-201ENST00000522353 CAGE1Q8TC20 777 aa19.15■□□□□ 0.66
PCDHA3-201ENST00000522353 A0A087WZG4 1122 aa19.14■□□□□ 0.66
PCDHA3-201ENST00000522353 RNF214Q8ND24 703 aa19.14■□□□□ 0.66
PCDHA3-201ENST00000522353 BCL11BQ9C0K0 894 aaPredicted RBP19.14■□□□□ 0.66
PCDHA3-201ENST00000522353 NPHP3Q7Z494 1330 aa19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 NOS1P29475 1434 aa19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 PRPF40AO75400 957 aaKnown RBP19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 SSBP05455 408 aaKnown RBP eCLIP19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 BRPF1P55201 1214 aaPredicted RBP19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 HSP90B2PQ58FF3 399 aa19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 CDC5LQ99459 802 aaKnown RBP19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 TSPY26PQ9H489 355 aa19.14■□□□□ 0.65
PCDHA3-201ENST00000522353 ZNF771Q7L3S4 317 aaPredicted RBP19.13■□□□□ 0.65
PCDHA3-201ENST00000522353 NAPBQ9H115 298 aa19.13■□□□□ 0.65
PCDHA3-201ENST00000522353 CCP110O43303 1012 aa19.13■□□□□ 0.65
PCDHA3-201ENST00000522353 TNIP1Q15025 636 aa19.13■□□□□ 0.65
PCDHA3-201ENST00000522353 SEC63Q9UGP8 760 aaKnown RBP19.13■□□□□ 0.65
PCDHA3-201ENST00000522353 CFAP45Q9UL16 551 aa19.13■□□□□ 0.65
PCDHA3-201ENST00000522353 NUTM1Q86Y26 1132 aa19.12■□□□□ 0.65
PCDHA3-201ENST00000522353 PCF11O94913 1555 aaKnown RBP19.12■□□□□ 0.65
PCDHA3-201ENST00000522353 CCDC196A0A1B0GTZ2 297 aa19.12■□□□□ 0.65
PCDHA3-201ENST00000522353 MX1P20591 662 aa19.12■□□□□ 0.65
PCDHA3-201ENST00000522353 K7ELQ4 463 aaPredicted RBP19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 C6orf229H3BNL8 230 aa19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 PPP1R42Q7Z4L9 355 aa19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 TXLNBQ8N3L3 684 aa19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 ACEP12821 1306 aa19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 MINDY4BA8MYZ0 360 aa19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 ANKRD24Q8TF21 1146 aa19.11■□□□□ 0.65
PCDHA3-201ENST00000522353 LDHCP07864 332 aa19.1■□□□□ 0.65
PCDHA3-201ENST00000522353 DDX46Q7L014 1031 aaKnown RBP19.1■□□□□ 0.65
PCDHA3-201ENST00000522353 PTPN23Q9H3S7 1636 aa19.1■□□□□ 0.65
PCDHA3-201ENST00000522353 SCAF11Q99590 1463 aaKnown RBP19.1■□□□□ 0.65
PCDHA3-201ENST00000522353 TANGO6Q9C0B7 1094 aa19.1■□□□□ 0.65
PCDHA3-201ENST00000522353 RFC4P35249 363 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 ZNF444Q8N0Y2 327 aaPredicted RBP19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 CCDC192P0DO97 292 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 TTLL12Q14166 644 aaPredicted RBP19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 IQCA1Q86XH1 822 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 ZBTB3Q9H5J0 574 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 CEP131Q9UPN4 1083 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 SERPINC1P01008 464 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 RNF41Q9H4P4 317 aaPredicted RBP19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 CTCFLQ8NI51 663 aaPredicted RBP19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 ERCC4Q92889 916 aaPredicted RBP19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 SSH1Q8WYL5 1049 aa19.09■□□□□ 0.65
PCDHA3-201ENST00000522353 GPTP24298 496 aa19.08■□□□□ 0.65
PCDHA3-201ENST00000522353 TNMDQ9H2S6 317 aa19.08■□□□□ 0.65
PCDHA3-201ENST00000522353 ZNF608Q9ULD9 1512 aaPredicted RBP19.08■□□□□ 0.65
PCDHA3-201ENST00000522353 TTC21AQ8NDW8 1320 aa19.08■□□□□ 0.65
PCDHA3-201ENST00000522353 URB2Q14146 1524 aaKnown RBP19.08■□□□□ 0.65
PCDHA3-201ENST00000522353 TTLL5Q6EMB2 1281 aa19.08■□□□□ 0.64
PCDHA3-201ENST00000522353 BOLA2Q9H3K6 86 aa19.08■□□□□ 0.64
PCDHA3-201ENST00000522353 UHRF1BP1LA0JNW5 1464 aa19.08■□□□□ 0.64
PCDHA3-201ENST00000522353 PPFIBP1Q86W92 1011 aa19.08■□□□□ 0.64
PCDHA3-201ENST00000522353 SNRPA1P09661 255 aaKnown RBP19.07■□□□□ 0.64
PCDHA3-201ENST00000522353 PTPRCP08575 1304 aa19.07■□□□□ 0.64
PCDHA3-201ENST00000522353 CHRNA2Q15822 529 aa19.07■□□□□ 0.64
PCDHA3-201ENST00000522353 CWC25Q9NXE8 425 aaPredicted RBP19.07■□□□□ 0.64
PCDHA3-201ENST00000522353 TRIM21P19474 475 aaKnown RBP19.07■□□□□ 0.64
PCDHA3-201ENST00000522353 DEF6Q9H4E7 631 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 DESP17661 470 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 FLIIQ13045 1269 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 SPATA32Q96LK8 384 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 FBXO3Q9UK99 471 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 MAP3K1Q13233 1512 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 PIBF1Q8WXW3 757 aa19.06■□□□□ 0.64
PCDHA3-201ENST00000522353 LDHAL6AQ6ZMR3 332 aa19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 CEP57L1Q8IYX8 460 aa19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 BACH2Q9BYV9 841 aa19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 SMARCC1Q92922 1105 aaPredicted RBP19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 KDM5BQ9UGL1 1544 aa19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 HMGB1P09429 215 aaKnown RBP19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 ZNF219Q9P2Y4 722 aaPredicted RBP19.05■□□□□ 0.64
PCDHA3-201ENST00000522353 ST5P78524 1137 aa19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 PAXIP1Q6ZW49 1069 aaPredicted RBP19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 BICRAQ9NZM4 1560 aa19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 CASTP20810 708 aaKnown RBP19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 RARSP54136 660 aaKnown RBP19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 MATR3P43243 847 aaKnown RBP eCLIP19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 TTF1Q15361 905 aaPredicted RBP19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 CCDC96Q2M329 555 aa19.04■□□□□ 0.64
PCDHA3-201ENST00000522353 ZCRB1Q8TBF4 217 aaKnown RBP19.03■□□□□ 0.64
PCDHA3-201ENST00000522353 DNAI2Q9GZS0 605 aa19.03■□□□□ 0.64
PCDHA3-201ENST00000522353 CIZ1Q9ULV3 898 aaPredicted RBP19.03■□□□□ 0.64
PCDHA3-201ENST00000522353 F6X3S4 739 aa19.03■□□□□ 0.64
PCDHA3-201ENST00000522353 BAG3O95817 575 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms