RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MTMR3Q13615 1198 aa12.2□□□□□ -0.46
LSM1-202ENST00000520286 NAA30Q147X3 362 aaPredicted RBP12.2□□□□□ -0.46
LSM1-202ENST00000520286 CCDC116Q8IYX3 515 aa12.2□□□□□ -0.46
LSM1-202ENST00000520286 ATAD2Q6PL18 1390 aa12.19□□□□□ -0.46
LSM1-202ENST00000520286 ADH1CP00326 375 aa12.19□□□□□ -0.46
LSM1-202ENST00000520286 MAPK1P28482 360 aa12.19□□□□□ -0.46
LSM1-202ENST00000520286 ECM1Q16610 540 aa12.19□□□□□ -0.46
LSM1-202ENST00000520286 CYP2U1Q7Z449 544 aa12.19□□□□□ -0.46
LSM1-202ENST00000520286 SIAH2O43255 324 aa12.18□□□□□ -0.46
LSM1-202ENST00000520286 LILRA1O75019 489 aa12.18□□□□□ -0.46
LSM1-202ENST00000520286 EPHA4P54764 986 aa12.18□□□□□ -0.46
LSM1-202ENST00000520286 PPP1R26Q5T8A7 1209 aaPredicted RBP12.18□□□□□ -0.46
LSM1-202ENST00000520286 NPAS4Q8IUM7 802 aa12.18□□□□□ -0.46
LSM1-202ENST00000520286 TSPAN10Q9H1Z9 355 aaPredicted RBP12.18□□□□□ -0.46
LSM1-202ENST00000520286 GNRH1P01148 92 aa12.17□□□□□ -0.46
LSM1-202ENST00000520286 NR5A1Q13285 461 aa12.17□□□□□ -0.46
LSM1-202ENST00000520286 LIAT1Q6ZQX7 453 aa12.17□□□□□ -0.46
LSM1-202ENST00000520286 HELQQ8TDG4 1101 aa12.17□□□□□ -0.46
LSM1-202ENST00000520286 CHMP7Q8WUX9 453 aaPredicted RBP12.17□□□□□ -0.46
LSM1-202ENST00000520286 RNF166Q96A37 237 aaPredicted RBP12.17□□□□□ -0.46
LSM1-202ENST00000520286 VTI1AQ96AJ9 217 aa12.17□□□□□ -0.46
LSM1-202ENST00000520286 DCTN4Q9UJW0 460 aa12.17□□□□□ -0.46
LSM1-202ENST00000520286 ZNF16P17020 682 aaPredicted RBP12.16□□□□□ -0.46
LSM1-202ENST00000520286 ARHGAP4P98171 946 aa12.16□□□□□ -0.46
LSM1-202ENST00000520286 ESCO1Q5FWF5 840 aa12.16□□□□□ -0.46
LSM1-202ENST00000520286 GIPC2Q8TF65 315 aa12.16□□□□□ -0.46
LSM1-202ENST00000520286 SLC4A9Q96Q91 983 aa12.16□□□□□ -0.46
LSM1-202ENST00000520286 MRRFQ96E11 262 aaKnown RBP12.14□□□□□ -0.47
LSM1-202ENST00000520286 ASB16Q96NS5 453 aa12.14□□□□□ -0.47
LSM1-202ENST00000520286 PGPEP1Q9NXJ5 209 aa12.14□□□□□ -0.47
LSM1-202ENST00000520286 WNT7AO00755 349 aa12.13□□□□□ -0.47
LSM1-202ENST00000520286 PPP1R12BO60237 982 aaPredicted RBP12.13□□□□□ -0.47
LSM1-202ENST00000520286 NR3C2P08235 984 aa12.13□□□□□ -0.47
LSM1-202ENST00000520286 ADD1P35611 737 aaKnown RBP12.13□□□□□ -0.47
LSM1-202ENST00000520286 ZSCAN29Q8IWY8 852 aaPredicted RBP12.13□□□□□ -0.47
LSM1-202ENST00000520286 EMID1Q96A84 441 aaPredicted RBP12.13□□□□□ -0.47
LSM1-202ENST00000520286 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.13□□□□□ -0.47
LSM1-202ENST00000520286 FAM13AO94988 1023 aa12.12□□□□□ -0.47
LSM1-202ENST00000520286 FOXK2Q01167 660 aa12.12□□□□□ -0.47
LSM1-202ENST00000520286 MRGPRX2Q96LB1 330 aa12.12□□□□□ -0.47
LSM1-202ENST00000520286 RAB6BQ9NRW1 208 aa12.12□□□□□ -0.47
LSM1-202ENST00000520286 SCHIP1Q9P0W5 487 aaPredicted RBP12.12□□□□□ -0.47
LSM1-202ENST00000520286 A0A1W2PRU2 124 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 A6NJY4 79 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 NPR3P17342 541 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 SMTNP53814 917 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 TBCELQ5QJ74 424 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 SLC9A9Q8IVB4 645 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 ARHGEF10LQ9HCE6 1279 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 KIAA1522Q9P206 1035 aaPredicted RBP12.11□□□□□ -0.47
LSM1-202ENST00000520286 EMILIN1Q9Y6C2 1016 aa12.11□□□□□ -0.47
LSM1-202ENST00000520286 MTFR1Q15390 333 aa12.1□□□□□ -0.47
LSM1-202ENST00000520286 ZNF326Q5BKZ1 582 aaKnown RBP12.1□□□□□ -0.47
LSM1-202ENST00000520286 C16orf46Q6P387 395 aa12.1□□□□□ -0.47
LSM1-202ENST00000520286 STAG2Q8N3U4 1231 aa12.09□□□□□ -0.47
LSM1-202ENST00000520286 SAP130Q9H0E3 1048 aa12.09□□□□□ -0.47
LSM1-202ENST00000520286 SLC19A1P41440 591 aa12.08□□□□□ -0.48
LSM1-202ENST00000520286 XAGE2Q96GT9 111 aa12.08□□□□□ -0.48
LSM1-202ENST00000520286 C2orf49Q9BVC5 232 aaPredicted RBP12.08□□□□□ -0.48
LSM1-202ENST00000520286 IL2RAP01589 272 aa12.07□□□□□ -0.48
LSM1-202ENST00000520286 MPSTP25325 297 aa12.07□□□□□ -0.48
LSM1-202ENST00000520286 PSMA6P60900 246 aaKnown RBP12.06□□□□□ -0.48
LSM1-202ENST00000520286 FBXO33Q7Z6M2 555 aa12.06□□□□□ -0.48
LSM1-202ENST00000520286 RGL4Q8IZJ4 473 aa12.06□□□□□ -0.48
LSM1-202ENST00000520286 CHMP3Q9Y3E7 222 aa12.06□□□□□ -0.48
LSM1-202ENST00000520286 TLR1Q15399 786 aa12.05□□□□□ -0.48
LSM1-202ENST00000520286 CNKSR1Q969H4 720 aa12.05□□□□□ -0.48
LSM1-202ENST00000520286 CDK2AP1O14519 115 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 ALDH1A1P00352 501 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 ADH1AP07327 375 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 NNTQ13423 1086 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 COX20Q5RI15 118 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 ESYT1Q9BSJ8 1104 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 RBCK1Q9BYM8 510 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 IGSF5Q9NSI5 407 aa12.04□□□□□ -0.48
LSM1-202ENST00000520286 NDUFB5O43674 189 aa12.03□□□□□ -0.48
LSM1-202ENST00000520286 COL19A1Q14993 1142 aa12.03□□□□□ -0.48
LSM1-202ENST00000520286 USP3Q9Y6I4 520 aa12.03□□□□□ -0.48
LSM1-202ENST00000520286 TAGLNQ01995 201 aaKnown RBP12.02□□□□□ -0.49
LSM1-202ENST00000520286 SPNS2Q8IVW8 549 aa12.02□□□□□ -0.49
LSM1-202ENST00000520286 QTRT2Q9H974 415 aaKnown RBP12.02□□□□□ -0.49
LSM1-202ENST00000520286 STIM2Q9P246 746 aa12.02□□□□□ -0.49
LSM1-202ENST00000520286 BRPF3Q9ULD4 1205 aa12.02□□□□□ -0.49
LSM1-202ENST00000520286 IQSEC3Q9UPP2 1182 aaPredicted RBP12.02□□□□□ -0.49
LSM1-202ENST00000520286 HRH3Q9Y5N1 445 aa12.02□□□□□ -0.49
LSM1-202ENST00000520286 WASF2Q9Y6W5 498 aa12.02□□□□□ -0.49
LSM1-202ENST00000520286 TNFRSF10BO14763 440 aa12.01□□□□□ -0.49
LSM1-202ENST00000520286 AAMPQ13685 434 aa12.01□□□□□ -0.49
LSM1-202ENST00000520286 EAPPQ56P03 285 aaPredicted RBP12.01□□□□□ -0.49
LSM1-202ENST00000520286 SPRYD7Q5W111 196 aa12.01□□□□□ -0.49
LSM1-202ENST00000520286 ALKBH2Q6NS38 261 aa12.01□□□□□ -0.49
LSM1-202ENST00000520286 TMC7Q7Z402 723 aa12.01□□□□□ -0.49
LSM1-202ENST00000520286 NBPF15Q8N660 670 aa12.01□□□□□ -0.49
LSM1-202ENST00000520286 EIF1AXP47813 144 aaKnown RBP12□□□□□ -0.49
LSM1-202ENST00000520286 CBLBQ13191 982 aa12□□□□□ -0.49
LSM1-202ENST00000520286 CLN3Q13286 438 aa12□□□□□ -0.49
LSM1-202ENST00000520286 KDF1Q8NAX2 398 aaPredicted RBP12□□□□□ -0.49
LSM1-202ENST00000520286 SERTM1A2A2V5 107 aa11.99□□□□□ -0.49
LSM1-202ENST00000520286 MYO19Q96H55 970 aa11.99□□□□□ -0.49
LSM1-202ENST00000520286 NGLY1Q96IV0 654 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms