RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TMEM121BQ9BXQ6 578 aaPredicted RBP11.06□□□□□ -0.64
SCN1A-207ENST00000507401 TAOK2Q9UL54 1235 aa11.06□□□□□ -0.64
SCN1A-207ENST00000507401 RTL1A6NKG5 1358 aa11.05□□□□□ -0.64
SCN1A-207ENST00000507401 FBLN1P23142 703 aa11.05□□□□□ -0.64
SCN1A-207ENST00000507401 R3HDM1Q15032 1099 aaKnown RBP11.05□□□□□ -0.64
SCN1A-207ENST00000507401 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.05□□□□□ -0.64
SCN1A-207ENST00000507401 TNS2Q63HR2 1409 aa11.04□□□□□ -0.64
SCN1A-207ENST00000507401 LTV1Q96GA3 475 aaPredicted RBP11.04□□□□□ -0.64
SCN1A-207ENST00000507401 BOLA1Q9Y3E2 137 aa11.04□□□□□ -0.64
SCN1A-207ENST00000507401 GTF3C3Q9Y5Q9 886 aa11.04□□□□□ -0.64
SCN1A-207ENST00000507401 FAM208AQ9UK61 1670 aaKnown RBP11.04□□□□□ -0.64
SCN1A-207ENST00000507401 RGPD3A6NKT7 1758 aaPredicted RBP11.03□□□□□ -0.64
SCN1A-207ENST00000507401 RGPD4Q7Z3J3 1758 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 STK25O00506 426 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 HSPA5P11021 654 aaKnown RBP11.03□□□□□ -0.64
SCN1A-207ENST00000507401 RRS1Q15050 365 aaKnown RBP11.03□□□□□ -0.64
SCN1A-207ENST00000507401 PTF1AQ7RTS3 328 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 FBXO22Q8NEZ5 403 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 STK24Q9Y6E0 443 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 RREB1Q92766 1687 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 CGNL1Q0VF96 1302 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 INSRP06213 1382 aa11.03□□□□□ -0.64
SCN1A-207ENST00000507401 POTEMA6NI47 508 aa11.02□□□□□ -0.65
SCN1A-207ENST00000507401 LRP5O75197 1615 aa11.02□□□□□ -0.65
SCN1A-207ENST00000507401 MYOM1P52179 1685 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 NSD3Q9BZ95 1437 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 KIF20BQ96Q89 1820 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 KCNQ2O43526 872 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 HSP90AB2PQ58FF8 381 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 NBPF6Q5VWK0 638 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 NBPF4Q96M43 638 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 MFRPQ9BY79 579 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 FLT4P35916 1363 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 NUP188Q5SRE5 1749 aa11.01□□□□□ -0.65
SCN1A-207ENST00000507401 TXNRD1Q16881 649 aa11□□□□□ -0.65
SCN1A-207ENST00000507401 C3orf67Q6ZVT6 689 aa11□□□□□ -0.65
SCN1A-207ENST00000507401 ZCRB1Q8TBF4 217 aaKnown RBP11□□□□□ -0.65
SCN1A-207ENST00000507401 DDX54Q8TDD1 881 aaKnown RBP11□□□□□ -0.65
SCN1A-207ENST00000507401 FAM163AQ96GL9 167 aaPredicted RBP11□□□□□ -0.65
SCN1A-207ENST00000507401 SMG6Q86US8 1419 aaKnown RBP11□□□□□ -0.65
SCN1A-207ENST00000507401 DIEXFQ68CQ4 756 aaKnown RBP10.99□□□□□ -0.65
SCN1A-207ENST00000507401 PANK3Q9H999 370 aa10.99□□□□□ -0.65
SCN1A-207ENST00000507401 WASHC2AQ641Q2 1341 aa10.99□□□□□ -0.65
SCN1A-207ENST00000507401 POTEGQ6S5H5 508 aa10.98□□□□□ -0.65
SCN1A-207ENST00000507401 RAPGEF4Q8WZA2 1011 aa10.98□□□□□ -0.65
SCN1A-207ENST00000507401 ACSBG1Q96GR2 724 aa10.98□□□□□ -0.65
SCN1A-207ENST00000507401 POLR3GLQ9BT43 218 aa10.98□□□□□ -0.65
SCN1A-207ENST00000507401 NHSQ6T4R5 1651 aa10.98□□□□□ -0.65
SCN1A-207ENST00000507401 TATP17735 454 aaPredicted RBP10.97□□□□□ -0.65
SCN1A-207ENST00000507401 POLKQ9UBT6 870 aa10.97□□□□□ -0.65
SCN1A-207ENST00000507401 EMILIN1Q9Y6C2 1016 aa10.97□□□□□ -0.65
SCN1A-207ENST00000507401 RGPD2P0DJD1 1756 aa10.97□□□□□ -0.65
SCN1A-207ENST00000507401 KAT6BQ8WYB5 2073 aa10.97□□□□□ -0.65
SCN1A-207ENST00000507401 MAP2P11137 1827 aaKnown RBP10.96□□□□□ -0.65
SCN1A-207ENST00000507401 NSD2O96028 1365 aa10.96□□□□□ -0.65
SCN1A-207ENST00000507401 SLC15A2Q16348 729 aa10.96□□□□□ -0.65
SCN1A-207ENST00000507401 MICALL2Q8IY33 904 aa10.96□□□□□ -0.65
SCN1A-207ENST00000507401 SPON1Q9HCB6 807 aa10.96□□□□□ -0.65
SCN1A-207ENST00000507401 STK32BQ9NY57 414 aa10.96□□□□□ -0.65
SCN1A-207ENST00000507401 PPM1GO15355 546 aaPredicted RBP10.95□□□□□ -0.66
SCN1A-207ENST00000507401 ST18O60284 1047 aa10.95□□□□□ -0.66
SCN1A-207ENST00000507401 HMGB2P26583 209 aaKnown RBP10.95□□□□□ -0.66
SCN1A-207ENST00000507401 PRIM1P49642 420 aaKnown RBP10.95□□□□□ -0.66
SCN1A-207ENST00000507401 SLC27A3Q5K4L6 730 aa10.95□□□□□ -0.66
SCN1A-207ENST00000507401 MEGF6O75095 1541 aa10.94□□□□□ -0.66
SCN1A-207ENST00000507401 USHBP1Q8N6Y0 703 aa10.94□□□□□ -0.66
SCN1A-207ENST00000507401 ANO8Q9HCE9 1232 aaPredicted RBP10.94□□□□□ -0.66
SCN1A-207ENST00000507401 KNSTRNQ9Y448 316 aa10.94□□□□□ -0.66
SCN1A-207ENST00000507401 NCAPD2Q15021 1401 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 BTAF1O14981 1849 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 ANKRD26Q9UPS8 1709 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 PCDH11XQ9BZA7 1347 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 PCDH11YQ9BZA8 1340 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 TMEM92Q6UXU6 159 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 HS6ST3Q8IZP7 471 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 EYA1Q99502 592 aa10.93□□□□□ -0.66
SCN1A-207ENST00000507401 PLEKHG2Q9H7P9 1386 aa10.92□□□□□ -0.66
SCN1A-207ENST00000507401 NKX1-1Q15270 411 aaPredicted RBP10.92□□□□□ -0.66
SCN1A-207ENST00000507401 MORC1Q86VD1 984 aa10.92□□□□□ -0.66
SCN1A-207ENST00000507401 SYTL4Q96C24 671 aaPredicted RBP10.92□□□□□ -0.66
SCN1A-207ENST00000507401 SPG7Q9UQ90 795 aa10.92□□□□□ -0.66
SCN1A-207ENST00000507401 SHANK3Q9BYB0 1731 aa10.92□□□□□ -0.66
SCN1A-207ENST00000507401 KIF7Q2M1P5 1343 aa10.91□□□□□ -0.66
SCN1A-207ENST00000507401 CYP27B1O15528 508 aa10.91□□□□□ -0.66
SCN1A-207ENST00000507401 TNNT2P45379 298 aaPredicted RBP10.91□□□□□ -0.66
SCN1A-207ENST00000507401 LRRC4BQ9NT99 713 aa10.91□□□□□ -0.66
SCN1A-207ENST00000507401 G3V3G9 751 aa10.9□□□□□ -0.66
SCN1A-207ENST00000507401 PER1O15534 1290 aaPredicted RBP10.9□□□□□ -0.66
SCN1A-207ENST00000507401 EIF4A2Q14240 407 aaKnown RBP10.9□□□□□ -0.66
SCN1A-207ENST00000507401 CASZ1Q86V15 1759 aa10.9□□□□□ -0.67
SCN1A-207ENST00000507401 AMER1Q5JTC6 1135 aaPredicted RBP10.89□□□□□ -0.67
SCN1A-207ENST00000507401 SLC16A10Q8TF71 515 aa10.89□□□□□ -0.67
SCN1A-207ENST00000507401 PDGFDQ9GZP0 370 aaPredicted RBP10.89□□□□□ -0.67
SCN1A-207ENST00000507401 MTFR1LQ9H019 292 aa10.89□□□□□ -0.67
SCN1A-207ENST00000507401 PPP1R1BQ9UD71 204 aaPredicted RBP10.89□□□□□ -0.67
SCN1A-207ENST00000507401 ZBTB7AO95365 584 aa10.88□□□□□ -0.67
SCN1A-207ENST00000507401 PTGER2P43116 358 aa10.88□□□□□ -0.67
SCN1A-207ENST00000507401 IFNL2Q8IZJ0 200 aa10.88□□□□□ -0.67
SCN1A-207ENST00000507401 DOT1LQ8TEK3 1739 aa10.88□□□□□ -0.67
SCN1A-207ENST00000507401 SMARCC1Q92922 1105 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms