RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 CCER1Q8TC90 406 aaPredicted RBP25.27■■□□□ 1.64
HDAC6-231ENST00000488905 ATP6V1AP38606 617 aa25.26■■□□□ 1.63
HDAC6-231ENST00000488905 ATG3Q9NT62 314 aa25.26■■□□□ 1.63
HDAC6-231ENST00000488905 KDM6AO15550 1401 aaPredicted RBP25.26■■□□□ 1.63
HDAC6-231ENST00000488905 KIF13BQ9NQT8 1826 aa25.24■■□□□ 1.63
HDAC6-231ENST00000488905 GNPATO15228 680 aa25.24■■□□□ 1.63
HDAC6-231ENST00000488905 VIRMAQ69YN4 1812 aaKnown RBP25.23■■□□□ 1.63
HDAC6-231ENST00000488905 SCN11AQ9UI33 1791 aa25.23■■□□□ 1.63
HDAC6-231ENST00000488905 ERVV-2B6SEH9 535 aa25.23■■□□□ 1.63
HDAC6-231ENST00000488905 HSP90AB1P08238 724 aaKnown RBP25.23■■□□□ 1.63
HDAC6-231ENST00000488905 MORC1Q86VD1 984 aa25.23■■□□□ 1.63
HDAC6-231ENST00000488905 DCAF5Q96JK2 942 aa25.23■■□□□ 1.63
HDAC6-231ENST00000488905 C4AP0C0L4 1744 aa25.23■■□□□ 1.63
HDAC6-231ENST00000488905 MYH14Q7Z406 1995 aaKnown RBP25.22■■□□□ 1.63
HDAC6-231ENST00000488905 PLEKHO1Q53GL0 409 aaPredicted RBP25.22■■□□□ 1.63
HDAC6-231ENST00000488905 C1QTNF8P60827 252 aa25.21■■□□□ 1.63
HDAC6-231ENST00000488905 ZNF530Q6P9A1 599 aaPredicted RBP25.21■■□□□ 1.63
HDAC6-231ENST00000488905 AMOTQ4VCS5 1084 aa25.2■■□□□ 1.62
HDAC6-231ENST00000488905 AEBP1Q8IUX7 1158 aa25.2■■□□□ 1.62
HDAC6-231ENST00000488905 KIAA1551Q9HCM1 1747 aa25.2■■□□□ 1.62
HDAC6-231ENST00000488905 CICQ96RK0 1608 aaPredicted RBP25.19■■□□□ 1.62
HDAC6-231ENST00000488905 KNSTRNQ9Y448 316 aa25.19■■□□□ 1.62
HDAC6-231ENST00000488905 GIGYF1O75420 1035 aaPredicted RBP25.18■■□□□ 1.62
HDAC6-231ENST00000488905 SLC4A9Q96Q91 983 aa25.18■■□□□ 1.62
HDAC6-231ENST00000488905 TJP1Q07157 1748 aa25.17■■□□□ 1.62
HDAC6-231ENST00000488905 RBM42Q9BTD8 480 aaKnown RBP25.17■■□□□ 1.62
HDAC6-231ENST00000488905 N4BP2Q86UW6 1770 aaPredicted RBP25.16■■□□□ 1.62
HDAC6-231ENST00000488905 CEP350Q5VT06 3117 aa25.15■■□□□ 1.62
HDAC6-231ENST00000488905 ATP10DQ9P241 1426 aa25.15■■□□□ 1.62
HDAC6-231ENST00000488905 CABP4P57796 275 aa25.15■■□□□ 1.62
HDAC6-231ENST00000488905 C1orf141Q5JVX7 400 aa25.15■■□□□ 1.62
HDAC6-231ENST00000488905 RTCBQ9Y3I0 505 aaKnown RBP25.15■■□□□ 1.62
HDAC6-231ENST00000488905 CNTNAP4Q9C0A0 1308 aa25.14■■□□□ 1.62
HDAC6-231ENST00000488905 SENP3-EIF4A1A0A087X0R7 540 aa25.14■■□□□ 1.62
HDAC6-231ENST00000488905 SULT6B1Q6IMI4 303 aa25.14■■□□□ 1.62
HDAC6-231ENST00000488905 AMER1Q5JTC6 1135 aaPredicted RBP25.13■■□□□ 1.61
HDAC6-231ENST00000488905 ADCY9O60503 1353 aa25.13■■□□□ 1.61
HDAC6-231ENST00000488905 KIF7Q2M1P5 1343 aa25.12■■□□□ 1.61
HDAC6-231ENST00000488905 MMP10P09238 476 aa25.12■■□□□ 1.61
HDAC6-231ENST00000488905 IL13P35225 146 aa25.12■■□□□ 1.61
HDAC6-231ENST00000488905 MTHFSP49914 203 aa25.12■■□□□ 1.61
HDAC6-231ENST00000488905 RC3H1Q5TC82 1133 aaKnown RBP25.12■■□□□ 1.61
HDAC6-231ENST00000488905 BRCA1P38398 1863 aaKnown RBP25.12■■□□□ 1.61
HDAC6-231ENST00000488905 PXDNLA1KZ92 1463 aa25.11■■□□□ 1.61
HDAC6-231ENST00000488905 ADRA2BP18089 450 aa25.11■■□□□ 1.61
HDAC6-231ENST00000488905 TRAPPC3LQ5T215 181 aa25.11■■□□□ 1.61
HDAC6-231ENST00000488905 WWC3Q9ULE0 1092 aa25.11■■□□□ 1.61
HDAC6-231ENST00000488905 C10orf71Q711Q0 1435 aa25.1■■□□□ 1.61
HDAC6-231ENST00000488905 MRC1P22897 1456 aa25.09■■□□□ 1.61
HDAC6-231ENST00000488905 ARHGEF1Q92888 912 aaKnown RBP25.08■■□□□ 1.61
HDAC6-231ENST00000488905 PTCD1O75127 700 aaKnown RBP25.07■■□□□ 1.6
HDAC6-231ENST00000488905 RPS6KA4O75676 772 aa25.07■■□□□ 1.6
HDAC6-231ENST00000488905 NLGN1Q8N2Q7 840 aa25.07■■□□□ 1.6
HDAC6-231ENST00000488905 NFATC2IPQ8NCF5 419 aa25.07■■□□□ 1.6
HDAC6-231ENST00000488905 ADAMTS7Q9UKP4 1686 aa25.07■■□□□ 1.6
HDAC6-231ENST00000488905 GYS1P13807 737 aa25.05■■□□□ 1.6
HDAC6-231ENST00000488905 RFC4P35249 363 aa25.05■■□□□ 1.6
HDAC6-231ENST00000488905 AKAP4Q5JQC9 854 aa25.04■■□□□ 1.6
HDAC6-231ENST00000488905 ARFGEF1Q9Y6D6 1849 aa25.03■■□□□ 1.6
HDAC6-231ENST00000488905 CRKLP46109 303 aaKnown RBP25.03■■□□□ 1.6
HDAC6-231ENST00000488905 GPBP1L1Q9HC44 474 aaPredicted RBP25.02■■□□□ 1.6
HDAC6-231ENST00000488905 UBR2Q8IWV8 1755 aa25.02■■□□□ 1.6
HDAC6-231ENST00000488905 TGFB2P61812 414 aa25.01■■□□□ 1.59
HDAC6-231ENST00000488905 CCDC87Q9NVE4 849 aa25.01■■□□□ 1.59
HDAC6-231ENST00000488905 SLC52A2Q9HAB3 445 aa25■■□□□ 1.59
HDAC6-231ENST00000488905 KCPQ6ZWJ8 1503 aa25■■□□□ 1.59
HDAC6-231ENST00000488905 PER1O15534 1290 aaPredicted RBP24.99■■□□□ 1.59
HDAC6-231ENST00000488905 HMOX1P09601 288 aa24.99■■□□□ 1.59
HDAC6-231ENST00000488905 USP42Q9H9J4 1324 aaKnown RBP24.99■■□□□ 1.59
HDAC6-231ENST00000488905 PARP3Q9Y6F1 533 aa24.99■■□□□ 1.59
HDAC6-231ENST00000488905 COL3A1P02461 1466 aaPredicted RBP24.98■■□□□ 1.59
HDAC6-231ENST00000488905 ZNF526Q8TF50 670 aaPredicted RBP24.98■■□□□ 1.59
HDAC6-231ENST00000488905 CC2D1BQ5T0F9 858 aaKnown RBP24.97■■□□□ 1.59
HDAC6-231ENST00000488905 A0A0G2JLW4 131 aa24.96■■□□□ 1.59
HDAC6-231ENST00000488905 LGR6Q9HBX8 967 aa24.96■■□□□ 1.59
HDAC6-231ENST00000488905 SRP68Q9UHB9 627 aaKnown RBP24.96■■□□□ 1.59
HDAC6-231ENST00000488905 AFDNP55196 1824 aaKnown RBP24.96■■□□□ 1.59
HDAC6-231ENST00000488905 RNMTO43148 476 aaKnown RBP24.95■■□□□ 1.58
HDAC6-231ENST00000488905 DIAPH1O60610 1272 aaKnown RBP24.95■■□□□ 1.58
HDAC6-231ENST00000488905 BCS1LQ9Y276 419 aa24.95■■□□□ 1.58
HDAC6-231ENST00000488905 SIPA1L3O60292 1781 aaPredicted RBP24.95■■□□□ 1.58
HDAC6-231ENST00000488905 NPC1L1Q9UHC9 1359 aa24.94■■□□□ 1.58
HDAC6-231ENST00000488905 INTS5Q6P9B9 1019 aaKnown RBP24.94■■□□□ 1.58
HDAC6-231ENST00000488905 DNAJC10Q8IXB1 793 aa24.94■■□□□ 1.58
HDAC6-231ENST00000488905 DPEP1P16444 411 aa24.93■■□□□ 1.58
HDAC6-231ENST00000488905 FKBP8Q14318 412 aa24.93■■□□□ 1.58
HDAC6-231ENST00000488905 MTHFSDQ2M296 383 aaKnown RBP24.93■■□□□ 1.58
HDAC6-231ENST00000488905 SOS1Q07889 1333 aaPredicted RBP24.91■■□□□ 1.58
HDAC6-231ENST00000488905 DDR1Q08345 913 aa24.91■■□□□ 1.58
HDAC6-231ENST00000488905 SLC39A6Q13433 755 aa24.91■■□□□ 1.58
HDAC6-231ENST00000488905 NRXN2Q9P2S2 1712 aa24.91■■□□□ 1.58
HDAC6-231ENST00000488905 FCHSD2O94868 740 aa24.89■■□□□ 1.58
HDAC6-231ENST00000488905 DLEC1Q9Y238 1755 aa24.89■■□□□ 1.57
HDAC6-231ENST00000488905 COL15A1P39059 1388 aa24.89■■□□□ 1.57
HDAC6-231ENST00000488905 CYP19A1P11511 503 aaPredicted RBP24.88■■□□□ 1.57
HDAC6-231ENST00000488905 POLRMTO00411 1230 aaKnown RBP24.87■■□□□ 1.57
HDAC6-231ENST00000488905 ZPR1O75312 459 aa24.87■■□□□ 1.57
HDAC6-231ENST00000488905 KCNA3P22001 575 aa24.87■■□□□ 1.57
HDAC6-231ENST00000488905 SBF1O95248 1867 aa24.86■■□□□ 1.57
HDAC6-231ENST00000488905 USPL1Q5W0Q7 1092 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms