RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PPP1R18Q6NYC8 613 aa8.49□□□□□ -1.05
UPF3B-203ENST00000478840 EHBP1Q8NDI1 1231 aa8.49□□□□□ -1.05
UPF3B-203ENST00000478840 MKNK1Q9BUB5 465 aa8.49□□□□□ -1.05
UPF3B-203ENST00000478840 ESF1Q9H501 851 aaKnown RBP8.49□□□□□ -1.05
UPF3B-203ENST00000478840 ANO2Q9NQ90 1003 aa8.49□□□□□ -1.05
UPF3B-203ENST00000478840 RC3H1Q5TC82 1133 aaKnown RBP8.48□□□□□ -1.05
UPF3B-203ENST00000478840 STAG2Q8N3U4 1231 aa8.48□□□□□ -1.05
UPF3B-203ENST00000478840 MRRFQ96E11 262 aaKnown RBP8.48□□□□□ -1.05
UPF3B-203ENST00000478840 SIAH2O43255 324 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 LILRA1O75019 489 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 CD2BP2O95400 341 aaKnown RBP8.47□□□□□ -1.05
UPF3B-203ENST00000478840 GNRH1P01148 92 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 FSHRP23945 695 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 FBXO33Q7Z6M2 555 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 TNS4Q8IZW8 715 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 GIPC2Q8TF65 315 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 SCG3Q8WXD2 468 aaKnown RBP8.47□□□□□ -1.05
UPF3B-203ENST00000478840 ETNK1Q9HBU6 452 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 TMPRSS4Q9NRS4 437 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 ATAD2Q6PL18 1390 aa8.47□□□□□ -1.05
UPF3B-203ENST00000478840 FAM13AO94988 1023 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 VAMP1P23763 118 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 MAPK1P28482 360 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 FOXK2Q01167 660 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 NR5A1Q13285 461 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 CYP2U1Q7Z449 544 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 ZSCAN29Q8IWY8 852 aaPredicted RBP8.46□□□□□ -1.06
UPF3B-203ENST00000478840 ZNF784Q8NCA9 323 aaPredicted RBP8.46□□□□□ -1.06
UPF3B-203ENST00000478840 CYLDQ9NQC7 956 aa8.46□□□□□ -1.06
UPF3B-203ENST00000478840 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.46□□□□□ -1.06
UPF3B-203ENST00000478840 ADH1CP00326 375 aa8.45□□□□□ -1.06
UPF3B-203ENST00000478840 MYT1Q01538 1121 aa8.45□□□□□ -1.06
UPF3B-203ENST00000478840 MTMR3Q13615 1198 aa8.45□□□□□ -1.06
UPF3B-203ENST00000478840 MTFR1Q15390 333 aa8.45□□□□□ -1.06
UPF3B-203ENST00000478840 ZNF326Q5BKZ1 582 aaKnown RBP8.45□□□□□ -1.06
UPF3B-203ENST00000478840 CCDC116Q8IYX3 515 aa8.45□□□□□ -1.06
UPF3B-203ENST00000478840 RGL4Q8IZJ4 473 aa8.45□□□□□ -1.06
UPF3B-203ENST00000478840 TSPAN10Q9H1Z9 355 aaPredicted RBP8.45□□□□□ -1.06
UPF3B-203ENST00000478840 ARID5BQ14865 1188 aa8.44□□□□□ -1.06
UPF3B-203ENST00000478840 ESCO1Q5FWF5 840 aa8.44□□□□□ -1.06
UPF3B-203ENST00000478840 POTEAQ6S8J7 498 aa8.44□□□□□ -1.06
UPF3B-203ENST00000478840 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.44□□□□□ -1.06
UPF3B-203ENST00000478840 SCHIP1Q9P0W5 487 aaPredicted RBP8.44□□□□□ -1.06
UPF3B-203ENST00000478840 STAU1O95793 577 aaKnown RBP8.43□□□□□ -1.06
UPF3B-203ENST00000478840 NAA30Q147X3 362 aaPredicted RBP8.43□□□□□ -1.06
UPF3B-203ENST00000478840 PPP1R26Q5T8A7 1209 aaPredicted RBP8.43□□□□□ -1.06
UPF3B-203ENST00000478840 C2orf49Q9BVC5 232 aaPredicted RBP8.43□□□□□ -1.06
UPF3B-203ENST00000478840 RBCK1Q9BYM8 510 aa8.43□□□□□ -1.06
UPF3B-203ENST00000478840 A0A1W2PRU2 124 aa8.42□□□□□ -1.06
UPF3B-203ENST00000478840 WNT7AO00755 349 aa8.42□□□□□ -1.06
UPF3B-203ENST00000478840 C16orf46Q6P387 395 aa8.42□□□□□ -1.06
UPF3B-203ENST00000478840 SERTAD1Q9UHV2 236 aa8.42□□□□□ -1.06
UPF3B-203ENST00000478840 TLL2Q9Y6L7 1015 aa8.42□□□□□ -1.06
UPF3B-203ENST00000478840 A6NJY4 79 aa8.41□□□□□ -1.06
UPF3B-203ENST00000478840 SMTNP53814 917 aa8.41□□□□□ -1.06
UPF3B-203ENST00000478840 LIAT1Q6ZQX7 453 aa8.41□□□□□ -1.06
UPF3B-203ENST00000478840 EMID1Q96A84 441 aaPredicted RBP8.41□□□□□ -1.06
UPF3B-203ENST00000478840 XAGE2Q96GT9 111 aa8.41□□□□□ -1.06
UPF3B-203ENST00000478840 CITED4Q96RK1 184 aa8.41□□□□□ -1.06
UPF3B-203ENST00000478840 PGPEP1Q9NXJ5 209 aa8.41□□□□□ -1.06
UPF3B-203ENST00000478840 IGSF3O75054 1194 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 ADD1P35611 737 aaKnown RBP8.4□□□□□ -1.06
UPF3B-203ENST00000478840 SLC9A9Q8IVB4 645 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 VTI1AQ96AJ9 217 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 MYO19Q96H55 970 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 SAP130Q9H0E3 1048 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 HRH3Q9Y5N1 445 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 EMILIN1Q9Y6C2 1016 aa8.4□□□□□ -1.06
UPF3B-203ENST00000478840 CDK2AP1O14519 115 aa8.39□□□□□ -1.07
UPF3B-203ENST00000478840 PPP1R12BO60237 982 aaPredicted RBP8.39□□□□□ -1.07
UPF3B-203ENST00000478840 NR3C2P08235 984 aa8.39□□□□□ -1.07
UPF3B-203ENST00000478840 MPSTP25325 297 aa8.39□□□□□ -1.07
UPF3B-203ENST00000478840 HIRAP54198 1017 aaPredicted RBP8.39□□□□□ -1.07
UPF3B-203ENST00000478840 PSMA6P60900 246 aaKnown RBP8.39□□□□□ -1.07
UPF3B-203ENST00000478840 PRKD2Q9BZL6 878 aa8.39□□□□□ -1.07
UPF3B-203ENST00000478840 IQSEC3Q9UPP2 1182 aaPredicted RBP8.39□□□□□ -1.07
UPF3B-203ENST00000478840 IL2RAP01589 272 aa8.38□□□□□ -1.07
UPF3B-203ENST00000478840 ALKBH2Q6NS38 261 aa8.38□□□□□ -1.07
UPF3B-203ENST00000478840 STIM2Q9P246 746 aa8.38□□□□□ -1.07
UPF3B-203ENST00000478840 TNFRSF10BO14763 440 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 TREHO43280 583 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 NDUFB5O43674 189 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 EAPPQ56P03 285 aaPredicted RBP8.37□□□□□ -1.07
UPF3B-203ENST00000478840 COX20Q5RI15 118 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 TMC7Q7Z402 723 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 CHMP7Q8WUX9 453 aaPredicted RBP8.37□□□□□ -1.07
UPF3B-203ENST00000478840 MRGPRX2Q96LB1 330 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 ESYT1Q9BSJ8 1104 aa8.37□□□□□ -1.07
UPF3B-203ENST00000478840 TCF3P15923 654 aa8.36□□□□□ -1.07
UPF3B-203ENST00000478840 EIF1AXP47813 144 aaKnown RBP8.36□□□□□ -1.07
UPF3B-203ENST00000478840 TAGLNQ01995 201 aaKnown RBP8.36□□□□□ -1.07
UPF3B-203ENST00000478840 FMR1Q06787 632 aaKnown RBP eCLIP8.36□□□□□ -1.07
UPF3B-203ENST00000478840 ZNF295-AS1Q8N0V1 137 aa8.36□□□□□ -1.07
UPF3B-203ENST00000478840 QTRT2Q9H974 415 aaKnown RBP8.36□□□□□ -1.07
UPF3B-203ENST00000478840 ARHGEF10LQ9HCE6 1279 aa8.36□□□□□ -1.07
UPF3B-203ENST00000478840 FZD6O60353 706 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 IGHA2P01877 340 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 ADH1AP07327 375 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 CLN3Q13286 438 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 DSC3Q14574 896 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms