RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 EDARADDQ8WWZ3 215 aa11.8□□□□□ -0.52
SCN9A-206ENST00000472119 CFTRP13569 1480 aa11.79□□□□□ -0.52
SCN9A-206ENST00000472119 ERCC6Q03468 1493 aa11.79□□□□□ -0.52
SCN9A-206ENST00000472119 AMPD1P23109 780 aa11.79□□□□□ -0.52
SCN9A-206ENST00000472119 TAS1R3Q7RTX0 852 aa11.79□□□□□ -0.52
SCN9A-206ENST00000472119 PROCA1Q8NCQ7 364 aaPredicted RBP11.79□□□□□ -0.52
SCN9A-206ENST00000472119 CFHR5Q9BXR6 569 aa11.79□□□□□ -0.52
SCN9A-206ENST00000472119 SUV39H2Q9H5I1 410 aa11.79□□□□□ -0.52
SCN9A-206ENST00000472119 GDF2Q9UK05 429 aaPredicted RBP11.79□□□□□ -0.52
SCN9A-206ENST00000472119 SPATA31C2B4DYI2 1134 aa11.78□□□□□ -0.52
SCN9A-206ENST00000472119 WASLO00401 505 aaPredicted RBP11.78□□□□□ -0.52
SCN9A-206ENST00000472119 SKIV2LQ15477 1246 aaKnown RBP11.78□□□□□ -0.52
SCN9A-206ENST00000472119 CC2D2BQ6DHV5 1058 aa11.78□□□□□ -0.52
SCN9A-206ENST00000472119 SLC24A3Q9HC58 644 aa11.78□□□□□ -0.52
SCN9A-206ENST00000472119 GPAMQ9HCL2 828 aa11.78□□□□□ -0.52
SCN9A-206ENST00000472119 PDS5BQ9NTI5 1447 aa11.77□□□□□ -0.52
SCN9A-206ENST00000472119 KRTAP9-6A0A140TA67 174 aa11.77□□□□□ -0.53
SCN9A-206ENST00000472119 PHF24Q9UPV7 400 aa11.77□□□□□ -0.53
SCN9A-206ENST00000472119 PCDHB9Q9Y5E1 797 aa11.77□□□□□ -0.53
SCN9A-206ENST00000472119 C1QTNF9BB2RNN3 333 aa11.76□□□□□ -0.53
SCN9A-206ENST00000472119 USP17L8P0C7I0 530 aa11.76□□□□□ -0.53
SCN9A-206ENST00000472119 CLN3Q13286 438 aa11.76□□□□□ -0.53
SCN9A-206ENST00000472119 WDR44Q5JSH3 913 aa11.76□□□□□ -0.53
SCN9A-206ENST00000472119 THBS1P07996 1170 aa11.75□□□□□ -0.53
SCN9A-206ENST00000472119 ERVK-9P63128 1117 aa11.75□□□□□ -0.53
SCN9A-206ENST00000472119 CYP2U1Q7Z449 544 aa11.75□□□□□ -0.53
SCN9A-206ENST00000472119 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.75□□□□□ -0.53
SCN9A-206ENST00000472119 GOLGA6L1Q8N7Z2 621 aa11.74□□□□□ -0.53
SCN9A-206ENST00000472119 ARHGEF10LQ9HCE6 1279 aa11.74□□□□□ -0.53
SCN9A-206ENST00000472119 LINC00114Q6XXX2 140 aa11.73□□□□□ -0.53
SCN9A-206ENST00000472119 SH3D19Q5HYK7 790 aa11.72□□□□□ -0.53
SCN9A-206ENST00000472119 CD163Q86VB7 1156 aa11.72□□□□□ -0.53
SCN9A-206ENST00000472119 FANCD2Q9BXW9 1451 aa11.71□□□□□ -0.53
SCN9A-206ENST00000472119 PHKA2P46019 1235 aa11.71□□□□□ -0.53
SCN9A-206ENST00000472119 PIK3R2O00459 728 aa11.7□□□□□ -0.54
SCN9A-206ENST00000472119 GNB5O14775 395 aa11.7□□□□□ -0.54
SCN9A-206ENST00000472119 BMP4P12644 408 aa11.7□□□□□ -0.54
SCN9A-206ENST00000472119 SCTRP47872 440 aa11.7□□□□□ -0.54
SCN9A-206ENST00000472119 SEMA6BQ9H3T3 888 aa11.7□□□□□ -0.54
SCN9A-206ENST00000472119 RAB6BQ9NRW1 208 aa11.7□□□□□ -0.54
SCN9A-206ENST00000472119 HOXB4P17483 251 aaPredicted RBP11.69□□□□□ -0.54
SCN9A-206ENST00000472119 CHRNA4P43681 627 aa11.69□□□□□ -0.54
SCN9A-206ENST00000472119 KIF21AQ7Z4S6 1674 aa11.68□□□□□ -0.54
SCN9A-206ENST00000472119 ITGB7P26010 798 aa11.68□□□□□ -0.54
SCN9A-206ENST00000472119 RNF20Q5VTR2 975 aa11.68□□□□□ -0.54
SCN9A-206ENST00000472119 CCDC125Q86Z20 511 aa11.68□□□□□ -0.54
SCN9A-206ENST00000472119 ESF1Q9H501 851 aaKnown RBP11.68□□□□□ -0.54
SCN9A-206ENST00000472119 GGA1Q9UJY5 639 aa11.68□□□□□ -0.54
SCN9A-206ENST00000472119 ZBBXA8MT70 800 aa11.67□□□□□ -0.54
SCN9A-206ENST00000472119 DOC2BQ14184 412 aa11.67□□□□□ -0.54
SCN9A-206ENST00000472119 SLCO4C1Q6ZQN7 724 aa11.67□□□□□ -0.54
SCN9A-206ENST00000472119 RUBCNLQ9H714 662 aa11.67□□□□□ -0.54
SCN9A-206ENST00000472119 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
SCN9A-206ENST00000472119 A0A1B0GTH6 734 aa11.66□□□□□ -0.54
SCN9A-206ENST00000472119 CSB-PGBD3P0DP91 1061 aa11.66□□□□□ -0.54
SCN9A-206ENST00000472119 ZMYM1Q5SVZ6 1142 aa11.66□□□□□ -0.54
SCN9A-206ENST00000472119 PGBD3Q8N328 593 aa11.66□□□□□ -0.54
SCN9A-206ENST00000472119 OSBPL3Q9H4L5 887 aa11.66□□□□□ -0.54
SCN9A-206ENST00000472119 PCDHB11Q9Y5F2 797 aa11.66□□□□□ -0.54
SCN9A-206ENST00000472119 NOP53Q9NZM5 478 aaKnown RBP11.65□□□□□ -0.54
SCN9A-206ENST00000472119 ATXN7L1Q9ULK2 861 aaPredicted RBP11.65□□□□□ -0.54
SCN9A-206ENST00000472119 C2CD2LO14523 706 aa11.64□□□□□ -0.55
SCN9A-206ENST00000472119 FBXO45P0C2W1 286 aa11.64□□□□□ -0.55
SCN9A-206ENST00000472119 UBAP2LQ14157 1087 aaKnown RBP11.64□□□□□ -0.55
SCN9A-206ENST00000472119 KRTAP1-3Q8IUG1 177 aa11.64□□□□□ -0.55
SCN9A-206ENST00000472119 ABHD17AQ96GS6 310 aa11.64□□□□□ -0.55
SCN9A-206ENST00000472119 BTBD6Q96KE9 485 aa11.64□□□□□ -0.55
SCN9A-206ENST00000472119 TRIM34Q9BYJ4 488 aa11.64□□□□□ -0.55
SCN9A-206ENST00000472119 FGFR3P22607 806 aa11.63□□□□□ -0.55
SCN9A-206ENST00000472119 LBRQ14739 615 aaKnown RBP11.63□□□□□ -0.55
SCN9A-206ENST00000472119 CNKSR1Q969H4 720 aa11.63□□□□□ -0.55
SCN9A-206ENST00000472119 MRC2Q9UBG0 1479 aa11.63□□□□□ -0.55
SCN9A-206ENST00000472119 TRAK2O60296 914 aa11.62□□□□□ -0.55
SCN9A-206ENST00000472119 CENPCQ03188 943 aa11.62□□□□□ -0.55
SCN9A-206ENST00000472119 EFHC2Q5JST6 749 aa11.62□□□□□ -0.55
SCN9A-206ENST00000472119 ZSCAN10Q96SZ4 725 aaPredicted RBP11.62□□□□□ -0.55
SCN9A-206ENST00000472119 EPXP11678 715 aa11.61□□□□□ -0.55
SCN9A-206ENST00000472119 CTBSQ01459 385 aa11.61□□□□□ -0.55
SCN9A-206ENST00000472119 ESYT1Q9BSJ8 1104 aa11.61□□□□□ -0.55
SCN9A-206ENST00000472119 THOC2Q8NI27 1593 aaKnown RBP11.61□□□□□ -0.55
SCN9A-206ENST00000472119 IL2RAP01589 272 aa11.6□□□□□ -0.55
SCN9A-206ENST00000472119 GTF2E1P29083 439 aaPredicted RBP11.6□□□□□ -0.55
SCN9A-206ENST00000472119 DGKGP49619 791 aa11.6□□□□□ -0.55
SCN9A-206ENST00000472119 GNASQ5JWF2 1037 aa11.6□□□□□ -0.55
SCN9A-206ENST00000472119 SCO2A0A1W2PP80 73 aa11.59□□□□□ -0.55
SCN9A-206ENST00000472119 MSX1P28360 303 aa11.59□□□□□ -0.55
SCN9A-206ENST00000472119 RFC5P40937 340 aa11.59□□□□□ -0.55
SCN9A-206ENST00000472119 TMEM214Q6NUQ4 689 aaKnown RBP11.59□□□□□ -0.55
SCN9A-206ENST00000472119 PRDM2Q13029 1718 aa11.59□□□□□ -0.55
SCN9A-206ENST00000472119 URB2Q14146 1524 aaKnown RBP11.59□□□□□ -0.55
SCN9A-206ENST00000472119 NEURL1BA8MQ27 555 aa11.58□□□□□ -0.56
SCN9A-206ENST00000472119 BNIP3LO60238 219 aa11.58□□□□□ -0.56
SCN9A-206ENST00000472119 GNRH1P01148 92 aa11.58□□□□□ -0.56
SCN9A-206ENST00000472119 RNF135Q8IUD6 432 aa11.58□□□□□ -0.56
SCN9A-206ENST00000472119 CUX2O14529 1486 aa11.57□□□□□ -0.56
SCN9A-206ENST00000472119 C4orf17Q53FE4 359 aa11.57□□□□□ -0.56
SCN9A-206ENST00000472119 DDRGK1Q96HY6 314 aa11.57□□□□□ -0.56
SCN9A-206ENST00000472119 FAM117AQ9C073 453 aa11.57□□□□□ -0.56
SCN9A-206ENST00000472119 WDR62O43379 1518 aa11.56□□□□□ -0.56
SCN9A-206ENST00000472119 ARAFP10398 606 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms