Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR5591-201ENST00000578248 65 ntBASIC-1.01□□□□□ -2.57
CCDC39Q9UFE4 MIR4770-201ENST00000579149 58 ntBASIC-1.02□□□□□ -2.57
CCDC39Q9UFE4 MIR4324-201ENST00000584846 72 ntBASIC-1.02□□□□□ -2.57
CCDC39Q9UFE4 RNU6-706P-201ENST00000517229 104 ntBASIC-1.03□□□□□ -2.57
CCDC39Q9UFE4 MIR4320-201ENST00000636981 65 ntBASIC-1.04□□□□□ -2.58
CCDC39Q9UFE4 MIR124-1-201ENST00000385275 85 ntBASIC-1.05□□□□□ -2.58
CCDC39Q9UFE4 SNX3P1X-201ENST00000414887 175 ntBASIC-1.05□□□□□ -2.58
CCDC39Q9UFE4 RNU6-10P-201ENST00000384036 107 ntBASIC-1.06□□□□□ -2.58
CCDC39Q9UFE4 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.08□□□□□ -2.58
CCDC39Q9UFE4 AC108019.1-201ENST00000512540 175 ntBASIC-1.08□□□□□ -2.58
CCDC39Q9UFE4 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.09□□□□□ -2.58
CCDC39Q9UFE4 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.09□□□□□ -2.58
CCDC39Q9UFE4 MIR198-201ENST00000637333 62 ntBASIC-1.09□□□□□ -2.58
CCDC39Q9UFE4 HLA-S-202ENST00000425174 53 ntBASIC-1.11□□□□□ -2.59
CCDC39Q9UFE4 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.12□□□□□ -2.59
CCDC39Q9UFE4 AL731768.1-201ENST00000603124 139 ntBASIC-1.12□□□□□ -2.59
CCDC39Q9UFE4 RNU6-627P-201ENST00000364032 102 ntBASIC-1.13□□□□□ -2.59
CCDC39Q9UFE4 MIR4756-201ENST00000577874 78 ntBASIC-1.13□□□□□ -2.59
CCDC39Q9UFE4 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.15□□□□□ -2.59
CCDC39Q9UFE4 MIR601-201ENST00000385256 79 ntBASIC-1.16□□□□□ -2.6
CCDC39Q9UFE4 MIR4748-201ENST00000578076 82 ntBASIC-1.16□□□□□ -2.6
CCDC39Q9UFE4 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.18□□□□□ -2.6
CCDC39Q9UFE4 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.19□□□□□ -2.6
CCDC39Q9UFE4 MIR3165-201ENST00000579874 75 ntBASIC-1.19□□□□□ -2.6
CCDC39Q9UFE4 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.2□□□□□ -2.6
CCDC39Q9UFE4 RNU6-118P-201ENST00000516552 102 ntBASIC-1.2□□□□□ -2.6
CCDC39Q9UFE4 MIR548AH-201ENST00000637109 76 ntBASIC-1.2□□□□□ -2.6
CCDC39Q9UFE4 MIR3115-201ENST00000577915 68 ntBASIC-1.21□□□□□ -2.6
CCDC39Q9UFE4 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.23□□□□□ -2.61
CCDC39Q9UFE4 RNU6-226P-201ENST00000363778 107 ntBASIC-1.24□□□□□ -2.61
CCDC39Q9UFE4 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.24□□□□□ -2.61
CCDC39Q9UFE4 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.25□□□□□ -2.61
CCDC39Q9UFE4 SNORD18.1-201ENST00000363807 70 ntBASIC-1.25□□□□□ -2.61
CCDC39Q9UFE4 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.26□□□□□ -2.61
CCDC39Q9UFE4 MIR664B-201ENST00000626756 61 ntBASIC-1.26□□□□□ -2.61
CCDC39Q9UFE4 RNY4P9-201ENST00000363194 97 ntBASIC-1.27□□□□□ -2.61
CCDC39Q9UFE4 RNA5SP461-201ENST00000516451 104 ntBASIC-1.3□□□□□ -2.62
CCDC39Q9UFE4 MIR4723-201ENST00000585070 81 ntBASIC-1.3□□□□□ -2.62
CCDC39Q9UFE4 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.31□□□□□ -2.62
CCDC39Q9UFE4 SNORD115-45-201ENST00000391078 81 ntBASIC-1.31□□□□□ -2.62
CCDC39Q9UFE4 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.31□□□□□ -2.62
CCDC39Q9UFE4 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.31□□□□□ -2.62
CCDC39Q9UFE4 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.31□□□□□ -2.62
CCDC39Q9UFE4 AL359920.1-201ENST00000618332 176 ntBASIC-1.32□□□□□ -2.62
CCDC39Q9UFE4 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.33□□□□□ -2.62
CCDC39Q9UFE4 U4.2-201ENST00000618561 85 ntBASIC-1.33□□□□□ -2.62
CCDC39Q9UFE4 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.34□□□□□ -2.62
CCDC39Q9UFE4 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.36□□□□□ -2.63
CCDC39Q9UFE4 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.36□□□□□ -2.63
CCDC39Q9UFE4 RNU6-194P-201ENST00000363862 105 ntBASIC-1.37□□□□□ -2.63
CCDC39Q9UFE4 RNA5SP180-201ENST00000516181 101 ntBASIC-1.37□□□□□ -2.63
CCDC39Q9UFE4 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.39□□□□□ -2.63
CCDC39Q9UFE4 RNA5SP405-201ENST00000363059 114 ntBASIC-1.4□□□□□ -2.63
CCDC39Q9UFE4 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.4□□□□□ -2.63
CCDC39Q9UFE4 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.41□□□□□ -2.64
CCDC39Q9UFE4 MIR365A-201ENST00000362260 87 ntBASIC-1.41□□□□□ -2.64
CCDC39Q9UFE4 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.41□□□□□ -2.64
CCDC39Q9UFE4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.44□□□□□ -2.64
CCDC39Q9UFE4 MIR4441-201ENST00000582623 100 ntBASIC-1.44□□□□□ -2.64
CCDC39Q9UFE4 MIR1285-2-201ENST00000408311 88 ntBASIC-1.45□□□□□ -2.64
CCDC39Q9UFE4 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.48□□□□□ -2.65
CCDC39Q9UFE4 MIR1207-201ENST00000408249 87 ntBASIC-1.48□□□□□ -2.65
CCDC39Q9UFE4 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.49□□□□□ -2.65
CCDC39Q9UFE4 RNY4P25-201ENST00000459254 96 ntBASIC-1.49□□□□□ -2.65
CCDC39Q9UFE4 MIR1246-201ENST00000636535 73 ntBASIC-1.51□□□□□ -2.65
CCDC39Q9UFE4 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.55□□□□□ -2.66
CCDC39Q9UFE4 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.56□□□□□ -2.66
CCDC39Q9UFE4 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.58□□□□□ -2.66
CCDC39Q9UFE4 RNU6-892P-201ENST00000410335 99 ntBASIC-1.6□□□□□ -2.67
CCDC39Q9UFE4 MIR5693-201ENST00000577722 73 ntBASIC-1.61□□□□□ -2.67
CCDC39Q9UFE4 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.61□□□□□ -2.67
CCDC39Q9UFE4 RNY4P27-201ENST00000363341 96 ntBASIC-1.62□□□□□ -2.67
CCDC39Q9UFE4 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-1.62□□□□□ -2.67
CCDC39Q9UFE4 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.65□□□□□ -2.67
CCDC39Q9UFE4 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.66□□□□□ -2.68
CCDC39Q9UFE4 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.68□□□□□ -2.68
CCDC39Q9UFE4 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.7□□□□□ -2.68
CCDC39Q9UFE4 RNU4-85P-201ENST00000364675 123 ntBASIC-1.7□□□□□ -2.68
CCDC39Q9UFE4 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.7□□□□□ -2.68
CCDC39Q9UFE4 SNORD114-13-201ENST00000364377 74 ntBASIC-1.71□□□□□ -2.68
CCDC39Q9UFE4 MIR3139-201ENST00000579145 76 ntBASIC-1.72□□□□□ -2.68
CCDC39Q9UFE4 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.73□□□□□ -2.69
CCDC39Q9UFE4 Y_RNA.165-201ENST00000363721 102 ntBASIC-1.8□□□□□ -2.7
CCDC39Q9UFE4 MT-TM-201ENST00000387377 68 ntBASIC-1.81□□□□□ -2.7
CCDC39Q9UFE4 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.81□□□□□ -2.7
CCDC39Q9UFE4 RNU6-230P-201ENST00000362457 104 ntBASIC-1.82□□□□□ -2.7
CCDC39Q9UFE4 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.82□□□□□ -2.7
CCDC39Q9UFE4 RNA5SP449-201ENST00000516871 130 ntBASIC-1.83□□□□□ -2.7
CCDC39Q9UFE4 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.86□□□□□ -2.71
CCDC39Q9UFE4 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.88□□□□□ -2.71
CCDC39Q9UFE4 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.89□□□□□ -2.71
CCDC39Q9UFE4 RNU6-119P-201ENST00000364882 107 ntBASIC-1.91□□□□□ -2.72
CCDC39Q9UFE4 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.95□□□□□ -2.72
CCDC39Q9UFE4 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.99□□□□□ -2.73
CCDC39Q9UFE4 MIR496-201ENST00000385226 102 ntBASIC-2.02□□□□□ -2.73
CCDC39Q9UFE4 RNY4P7-201ENST00000364600 96 ntBASIC-2.08□□□□□ -2.74
CCDC39Q9UFE4 RNU6-665P-201ENST00000384639 107 ntBASIC-2.1□□□□□ -2.75
CCDC39Q9UFE4 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.19□□□□□ -2.76
CCDC39Q9UFE4 SNORD54-201ENST00000459159 67 ntBASIC-2.2□□□□□ -2.76
CCDC39Q9UFE4 RNA5SP93-201ENST00000362525 114 ntBASIC-2.26□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 221.2 ms