Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 RNU6-1340P-201ENST00000384438 107 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 AC097484.2-201ENST00000509147 251 ntBASIC-0.46□□□□□ -2.48
COL4A4P53420 RNU6-1091P-201ENST00000363945 107 ntBASIC-0.47□□□□□ -2.48
COL4A4P53420 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.48□□□□□ -2.49
COL4A4P53420 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.49□□□□□ -2.49
COL4A4P53420 MIR1285-2-201ENST00000408311 88 ntBASIC-0.5□□□□□ -2.49
COL4A4P53420 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.51□□□□□ -2.49
COL4A4P53420 RNU6-983P-201ENST00000516004 103 ntBASIC-0.52□□□□□ -2.49
COL4A4P53420 MIR3115-201ENST00000577915 68 ntBASIC-0.52□□□□□ -2.49
COL4A4P53420 HLA-S-202ENST00000425174 53 ntBASIC-0.53□□□□□ -2.49
COL4A4P53420 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.53□□□□□ -2.49
COL4A4P53420 RNY4P27-201ENST00000363341 96 ntBASIC-0.53□□□□□ -2.49
COL4A4P53420 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.53□□□□□ -2.49
COL4A4P53420 RNY4P7-201ENST00000364600 96 ntBASIC-0.53□□□□□ -2.49
COL4A4P53420 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.54□□□□□ -2.5
COL4A4P53420 RNA5SP86-201ENST00000390869 98 ntBASIC-0.54□□□□□ -2.5
COL4A4P53420 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.55□□□□□ -2.5
COL4A4P53420 MIR487B-201ENST00000385021 84 ntBASIC-0.55□□□□□ -2.5
COL4A4P53420 MIR4748-201ENST00000578076 82 ntBASIC-0.55□□□□□ -2.5
COL4A4P53420 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.56□□□□□ -2.5
COL4A4P53420 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.56□□□□□ -2.5
COL4A4P53420 MIR548T-201ENST00000408369 74 ntBASIC-0.56□□□□□ -2.5
COL4A4P53420 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.56□□□□□ -2.5
COL4A4P53420 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.57□□□□□ -2.5
COL4A4P53420 AC108019.1-201ENST00000512540 175 ntBASIC-0.58□□□□□ -2.5
COL4A4P53420 RNU6-854P-201ENST00000364036 107 ntBASIC-0.59□□□□□ -2.5
COL4A4P53420 MIR4756-201ENST00000577874 78 ntBASIC-0.59□□□□□ -2.5
COL4A4P53420 MIR1246-201ENST00000636535 73 ntBASIC-0.59□□□□□ -2.5
COL4A4P53420 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.6□□□□□ -2.51
COL4A4P53420 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.61□□□□□ -2.51
COL4A4P53420 MIR124-1-201ENST00000385275 85 ntBASIC-0.61□□□□□ -2.51
COL4A4P53420 RNY4P9-201ENST00000363194 97 ntBASIC-0.62□□□□□ -2.51
COL4A4P53420 RNU6-422P-201ENST00000384632 107 ntBASIC-0.62□□□□□ -2.51
COL4A4P53420 RNU6-1043P-201ENST00000410355 99 ntBASIC-0.62□□□□□ -2.51
COL4A4P53420 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.62□□□□□ -2.51
COL4A4P53420 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.62□□□□□ -2.51
COL4A4P53420 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.63□□□□□ -2.51
COL4A4P53420 AL731768.1-201ENST00000603124 139 ntBASIC-0.63□□□□□ -2.51
COL4A4P53420 RNU6-226P-201ENST00000363778 107 ntBASIC-0.64□□□□□ -2.51
COL4A4P53420 MIR664B-201ENST00000626756 61 ntBASIC-0.64□□□□□ -2.51
COL4A4P53420 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.65□□□□□ -2.51
COL4A4P53420 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.65□□□□□ -2.51
COL4A4P53420 SNORD18.1-201ENST00000363807 70 ntBASIC-0.65□□□□□ -2.51
COL4A4P53420 RNU6-620P-201ENST00000384017 96 ntBASIC-0.66□□□□□ -2.52
COL4A4P53420 Y_RNA.652-201ENST00000458902 102 ntBASIC-0.66□□□□□ -2.52
COL4A4P53420 RNU6-118P-201ENST00000516552 102 ntBASIC-0.67□□□□□ -2.52
COL4A4P53420 RNU6-119P-201ENST00000364882 107 ntBASIC-0.68□□□□□ -2.52
COL4A4P53420 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.68□□□□□ -2.52
COL4A4P53420 RNA5SP180-201ENST00000516181 101 ntBASIC-0.68□□□□□ -2.52
COL4A4P53420 RNU6-737P-201ENST00000365370 107 ntBASIC-0.69□□□□□ -2.52
COL4A4P53420 RNU6-1024P-201ENST00000384199 107 ntBASIC-0.69□□□□□ -2.52
COL4A4P53420 RNA5SP405-201ENST00000363059 114 ntBASIC-0.7□□□□□ -2.52
COL4A4P53420 SNX3P1Y-201ENST00000615757 176 ntBASIC-0.7□□□□□ -2.52
COL4A4P53420 MIRLET7A3-201ENST00000362116 74 ntBASIC-0.71□□□□□ -2.52
COL4A4P53420 Y_RNA.137-201ENST00000363455 112 ntBASIC-0.71□□□□□ -2.52
COL4A4P53420 RNU6-1161P-201ENST00000516176 102 ntBASIC-0.71□□□□□ -2.52
COL4A4P53420 RNU6-194P-201ENST00000363862 105 ntBASIC-0.72□□□□□ -2.52
COL4A4P53420 RNU6-1277P-201ENST00000364561 107 ntBASIC-0.72□□□□□ -2.52
COL4A4P53420 Y_RNA.59-201ENST00000362828 102 ntBASIC-0.72□□□□□ -2.53
COL4A4P53420 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.72□□□□□ -2.53
COL4A4P53420 Y_RNA.612-201ENST00000410717 95 ntBASIC-0.72□□□□□ -2.53
COL4A4P53420 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.73□□□□□ -2.53
COL4A4P53420 Y_RNA.663-201ENST00000516043 101 ntBASIC-0.75□□□□□ -2.53
COL4A4P53420 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.75□□□□□ -2.53
COL4A4P53420 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
COL4A4P53420 RNY4P25-201ENST00000459254 96 ntBASIC-0.75□□□□□ -2.53
COL4A4P53420 Y_RNA.513-201ENST00000384522 100 ntBASIC-0.76□□□□□ -2.53
COL4A4P53420 RNU6-627P-201ENST00000364032 102 ntBASIC-0.78□□□□□ -2.53
COL4A4P53420 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.78□□□□□ -2.53
COL4A4P53420 RNA5SP93-201ENST00000362525 114 ntBASIC-0.8□□□□□ -2.54
COL4A4P53420 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.81□□□□□ -2.54
COL4A4P53420 MIR548AH-201ENST00000637109 76 ntBASIC-0.81□□□□□ -2.54
COL4A4P53420 Y_RNA.266-201ENST00000364678 96 ntBASIC-0.81□□□□□ -2.54
COL4A4P53420 SNORD115-45-201ENST00000391078 81 ntBASIC-0.82□□□□□ -2.54
COL4A4P53420 MIR5693-201ENST00000577722 73 ntBASIC-0.82□□□□□ -2.54
COL4A4P53420 AL359920.1-201ENST00000618332 176 ntBASIC-0.82□□□□□ -2.54
COL4A4P53420 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.83□□□□□ -2.54
COL4A4P53420 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.83□□□□□ -2.54
COL4A4P53420 RNU6-1044P-201ENST00000384755 107 ntBASIC-0.84□□□□□ -2.54
COL4A4P53420 MIR3139-201ENST00000579145 76 ntBASIC-0.84□□□□□ -2.54
COL4A4P53420 Y_RNA.830-201ENST00000628531 96 ntBASIC-0.84□□□□□ -2.54
COL4A4P53420 MIR496-201ENST00000385226 102 ntBASIC-0.84□□□□□ -2.54
COL4A4P53420 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.85□□□□□ -2.55
COL4A4P53420 SNORD114-13-201ENST00000364377 74 ntBASIC-0.86□□□□□ -2.55
COL4A4P53420 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.86□□□□□ -2.55
COL4A4P53420 RNU6-230P-201ENST00000362457 104 ntBASIC-0.91□□□□□ -2.56
COL4A4P53420 Y_RNA.79-201ENST00000362992 113 ntBASIC-0.91□□□□□ -2.56
COL4A4P53420 RNU4-85P-201ENST00000364675 123 ntBASIC-0.91□□□□□ -2.56
COL4A4P53420 RNY4-201ENST00000516507 96 ntBASIC-0.94□□□□□ -2.56
COL4A4P53420 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-0.94□□□□□ -2.56
COL4A4P53420 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.94□□□□□ -2.56
COL4A4P53420 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.96□□□□□ -2.56
COL4A4P53420 MT-TM-201ENST00000387377 68 ntBASIC-0.96□□□□□ -2.56
COL4A4P53420 SNORD54-201ENST00000459159 67 ntBASIC-0.96□□□□□ -2.56
COL4A4P53420 Y_RNA.165-201ENST00000363721 102 ntBASIC-0.97□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 185.8 ms