Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.95□□□□□ -2.56
HOXA1P49639 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.96□□□□□ -2.56
HOXA1P49639 RNU6-930P-201ENST00000390938 100 ntBASIC-0.96□□□□□ -2.56
HOXA1P49639 MIR4317-201ENST00000637586 65 ntBASIC-0.96□□□□□ -2.56
HOXA1P49639 MIR4748-201ENST00000578076 82 ntBASIC-0.97□□□□□ -2.56
HOXA1P49639 MIR3139-201ENST00000579145 76 ntBASIC-0.97□□□□□ -2.56
HOXA1P49639 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.98□□□□□ -2.57
HOXA1P49639 SNORD45C-201ENST00000383893 79 ntBASIC-0.98□□□□□ -2.57
HOXA1P49639 RNU6-614P-201ENST00000384369 107 ntBASIC-0.98□□□□□ -2.57
HOXA1P49639 U6.59-201ENST00000615686 107 ntBASIC-0.98□□□□□ -2.57
HOXA1P49639 MTND4LP19-201ENST00000403051 166 ntBASIC-0.99□□□□□ -2.57
HOXA1P49639 RNU6-1277P-201ENST00000364561 107 ntBASIC-1□□□□□ -2.57
HOXA1P49639 RNU6-345P-201ENST00000517001 107 ntBASIC-1□□□□□ -2.57
HOXA1P49639 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1□□□□□ -2.57
HOXA1P49639 RNU6-822P-201ENST00000362707 106 ntBASIC-1.01□□□□□ -2.57
HOXA1P49639 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.01□□□□□ -2.57
HOXA1P49639 MT-TM-201ENST00000387377 68 ntBASIC-1.01□□□□□ -2.57
HOXA1P49639 MIR1285-2-201ENST00000408311 88 ntBASIC-1.01□□□□□ -2.57
HOXA1P49639 SNX3P1X-201ENST00000414887 175 ntBASIC-1.01□□□□□ -2.57
HOXA1P49639 RNU6-836P-201ENST00000362920 107 ntBASIC-1.02□□□□□ -2.57
HOXA1P49639 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.02□□□□□ -2.57
HOXA1P49639 MIR656-201ENST00000385224 78 ntBASIC-1.03□□□□□ -2.57
HOXA1P49639 RNU6-737P-201ENST00000365370 107 ntBASIC-1.04□□□□□ -2.58
HOXA1P49639 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.05□□□□□ -2.58
HOXA1P49639 SNORD115-45-201ENST00000391078 81 ntBASIC-1.06□□□□□ -2.58
HOXA1P49639 AL731768.1-201ENST00000603124 139 ntBASIC-1.06□□□□□ -2.58
HOXA1P49639 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.06□□□□□ -2.58
HOXA1P49639 MIR548AH-201ENST00000637109 76 ntBASIC-1.06□□□□□ -2.58
HOXA1P49639 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.07□□□□□ -2.58
HOXA1P49639 MIR124-1-201ENST00000385275 85 ntBASIC-1.07□□□□□ -2.58
HOXA1P49639 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.08□□□□□ -2.58
HOXA1P49639 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.08□□□□□ -2.58
HOXA1P49639 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.09□□□□□ -2.58
HOXA1P49639 RNY4P9-201ENST00000363194 97 ntBASIC-1.09□□□□□ -2.58
HOXA1P49639 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.1□□□□□ -2.59
HOXA1P49639 MIR601-201ENST00000385256 79 ntBASIC-1.1□□□□□ -2.59
HOXA1P49639 MIR198-201ENST00000637333 62 ntBASIC-1.1□□□□□ -2.59
HOXA1P49639 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.11□□□□□ -2.59
HOXA1P49639 MIR5693-201ENST00000577722 73 ntBASIC-1.11□□□□□ -2.59
HOXA1P49639 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.12□□□□□ -2.59
HOXA1P49639 SNORD111B-201ENST00000408587 80 ntBASIC-1.12□□□□□ -2.59
HOXA1P49639 MIR4441-201ENST00000582623 100 ntBASIC-1.12□□□□□ -2.59
HOXA1P49639 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.13□□□□□ -2.59
HOXA1P49639 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.13□□□□□ -2.59
HOXA1P49639 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.13□□□□□ -2.59
HOXA1P49639 MIR365A-201ENST00000362260 87 ntBASIC-1.14□□□□□ -2.59
HOXA1P49639 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.14□□□□□ -2.59
HOXA1P49639 MIR496-201ENST00000385226 102 ntBASIC-1.15□□□□□ -2.59
HOXA1P49639 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.15□□□□□ -2.59
HOXA1P49639 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.16□□□□□ -2.6
HOXA1P49639 RNU6-230P-201ENST00000362457 104 ntBASIC-1.16□□□□□ -2.6
HOXA1P49639 RNU6-987P-201ENST00000384759 104 ntBASIC-1.16□□□□□ -2.6
HOXA1P49639 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.16□□□□□ -2.6
HOXA1P49639 RNU4-37P-201ENST00000410214 84 ntBASIC-1.17□□□□□ -2.6
HOXA1P49639 AL359920.1-201ENST00000618332 176 ntBASIC-1.17□□□□□ -2.6
HOXA1P49639 RNY4P25-201ENST00000459254 96 ntBASIC-1.18□□□□□ -2.6
HOXA1P49639 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.2□□□□□ -2.6
HOXA1P49639 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.2□□□□□ -2.6
HOXA1P49639 U4.2-201ENST00000618561 85 ntBASIC-1.22□□□□□ -2.6
HOXA1P49639 RNU6-485P-201ENST00000363475 107 ntBASIC-1.23□□□□□ -2.61
HOXA1P49639 RNU6-422P-201ENST00000384632 107 ntBASIC-1.23□□□□□ -2.61
HOXA1P49639 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.23□□□□□ -2.61
HOXA1P49639 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 RNU6-1024P-201ENST00000384199 107 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 U6.103-201ENST00000637085 61 ntBASIC-1.24□□□□□ -2.61
HOXA1P49639 RNU6-724P-201ENST00000390958 105 ntBASIC-1.25□□□□□ -2.61
HOXA1P49639 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.26□□□□□ -2.61
HOXA1P49639 RNY4P27-201ENST00000363341 96 ntBASIC-1.27□□□□□ -2.61
HOXA1P49639 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.27□□□□□ -2.61
HOXA1P49639 RNA5SP93-201ENST00000362525 114 ntBASIC-1.28□□□□□ -2.61
HOXA1P49639 SNORD114-13-201ENST00000364377 74 ntBASIC-1.28□□□□□ -2.61
HOXA1P49639 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.29□□□□□ -2.62
HOXA1P49639 MIR4723-201ENST00000585070 81 ntBASIC-1.29□□□□□ -2.62
HOXA1P49639 RNU6-1091P-201ENST00000363945 107 ntBASIC-1.32□□□□□ -2.62
HOXA1P49639 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.32□□□□□ -2.62
HOXA1P49639 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.33□□□□□ -2.62
HOXA1P49639 SNORD114-3-201ENST00000364969 75 ntBASIC-1.33□□□□□ -2.62
HOXA1P49639 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.35□□□□□ -2.63
HOXA1P49639 SNORD54-201ENST00000459159 67 ntBASIC-1.35□□□□□ -2.63
HOXA1P49639 RNU6-119P-201ENST00000364882 107 ntBASIC-1.37□□□□□ -2.63
HOXA1P49639 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.37□□□□□ -2.63
HOXA1P49639 RNA5SP449-201ENST00000516871 130 ntBASIC-1.37□□□□□ -2.63
HOXA1P49639 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.37□□□□□ -2.63
HOXA1P49639 RNU6-620P-201ENST00000384017 96 ntBASIC-1.38□□□□□ -2.63
HOXA1P49639 MIR1207-201ENST00000408249 87 ntBASIC-1.39□□□□□ -2.63
HOXA1P49639 RNU6-894P-201ENST00000517094 105 ntBASIC-1.4□□□□□ -2.63
HOXA1P49639 RNU6-665P-201ENST00000384639 107 ntBASIC-1.43□□□□□ -2.64
HOXA1P49639 MIR509-1-201ENST00000385265 94 ntBASIC-1.43□□□□□ -2.64
HOXA1P49639 MIR509-2-201ENST00000390724 91 ntBASIC-1.43□□□□□ -2.64
HOXA1P49639 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-1.43□□□□□ -2.64
HOXA1P49639 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-1.43□□□□□ -2.64
HOXA1P49639 RNU6-803P-201ENST00000516034 102 ntBASIC-1.44□□□□□ -2.64
HOXA1P49639 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.46□□□□□ -2.64
HOXA1P49639 RNA5SP106-201ENST00000517274 100 ntBASIC-1.46□□□□□ -2.64
HOXA1P49639 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.47□□□□□ -2.64
HOXA1P49639 RNU6-133P-201ENST00000383989 107 ntBASIC-1.48□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 213.9 ms