Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR4667-201ENST00000578933 66 ntBASIC0.05□□□□□ -2.4
COL9A1P20849 Y_RNA.103-201ENST00000363171 102 ntBASIC0.04□□□□□ -2.4
COL9A1P20849 RNU6-10P-201ENST00000384036 107 ntBASIC0.04□□□□□ -2.4
COL9A1P20849 Y_RNA.663-201ENST00000516043 101 ntBASIC0.03□□□□□ -2.4
COL9A1P20849 Y_RNA.696-201ENST00000516725 107 ntBASIC0.03□□□□□ -2.4
COL9A1P20849 AL731768.1-201ENST00000603124 139 ntBASIC0.03□□□□□ -2.4
COL9A1P20849 RNY4-201ENST00000516507 96 ntBASIC0.02□□□□□ -2.41
COL9A1P20849 MIR4441-201ENST00000582623 100 ntBASIC0.02□□□□□ -2.41
COL9A1P20849 RNU6-226P-201ENST00000363778 107 ntBASIC0.01□□□□□ -2.41
COL9A1P20849 Y_RNA.442-201ENST00000384131 102 ntBASIC0.01□□□□□ -2.41
COL9A1P20849 MIR496-201ENST00000385226 102 ntBASIC0.01□□□□□ -2.41
COL9A1P20849 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
COL9A1P20849 RNA5SP180-201ENST00000516181 101 ntBASIC0.01□□□□□ -2.41
COL9A1P20849 MIR4324-201ENST00000584846 72 ntBASIC0.01□□□□□ -2.41
COL9A1P20849 MIR6502-201ENST00000617296 76 ntBASIC0.01□□□□□ -2.41
COL9A1P20849 Y_RNA.391-201ENST00000383933 94 ntBASIC0□□□□□ -2.41
COL9A1P20849 MIR6738-201ENST00000619620 64 ntBASIC0□□□□□ -2.41
COL9A1P20849 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.01□□□□□ -2.41
COL9A1P20849 MIR1285-2-201ENST00000408311 88 ntBASIC-0.01□□□□□ -2.41
COL9A1P20849 RNA5SP93-201ENST00000362525 114 ntBASIC-0.02□□□□□ -2.41
COL9A1P20849 MIR3115-201ENST00000577915 68 ntBASIC-0.02□□□□□ -2.41
COL9A1P20849 MIR196A2-201ENST00000385189 110 ntBASIC-0.03□□□□□ -2.41
COL9A1P20849 SNORD115-45-201ENST00000391078 81 ntBASIC-0.03□□□□□ -2.41
COL9A1P20849 SCARNA17-201ENST00000516183 144 ntBASIC-0.03□□□□□ -2.41
COL9A1P20849 SNORD14C-201ENST00000365382 88 ntBASIC-0.04□□□□□ -2.42
COL9A1P20849 SNORD126-201ENST00000459475 77 ntBASIC-0.04□□□□□ -2.42
COL9A1P20849 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.05□□□□□ -2.42
COL9A1P20849 MIR8485-201ENST00000401372 91 ntBASIC-0.05□□□□□ -2.42
COL9A1P20849 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.05□□□□□ -2.42
COL9A1P20849 RNA5SP275-201ENST00000363936 118 ntBASIC-0.06□□□□□ -2.42
COL9A1P20849 MIR548AZ-201ENST00000616567 95 ntBASIC-0.06□□□□□ -2.42
COL9A1P20849 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.06□□□□□ -2.42
COL9A1P20849 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.07□□□□□ -2.42
COL9A1P20849 AL359920.1-201ENST00000618332 176 ntBASIC-0.07□□□□□ -2.42
COL9A1P20849 SNORA32.3-201ENST00000384772 121 ntBASIC-0.08□□□□□ -2.42
COL9A1P20849 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.08□□□□□ -2.42
COL9A1P20849 RNU6-320P-201ENST00000516511 106 ntBASIC-0.08□□□□□ -2.42
COL9A1P20849 RNU6-1277P-201ENST00000364561 107 ntBASIC-0.09□□□□□ -2.42
COL9A1P20849 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.09□□□□□ -2.42
COL9A1P20849 MIR196A1-201ENST00000388006 70 ntBASIC-0.09□□□□□ -2.42
COL9A1P20849 RNU4-85P-201ENST00000364675 123 ntBASIC-0.1□□□□□ -2.43
COL9A1P20849 MIR1246-201ENST00000636535 73 ntBASIC-0.1□□□□□ -2.43
COL9A1P20849 MIR487B-201ENST00000385021 84 ntBASIC-0.11□□□□□ -2.43
COL9A1P20849 RNU6-118P-201ENST00000516552 102 ntBASIC-0.11□□□□□ -2.43
COL9A1P20849 MIR4499-201ENST00000584834 69 ntBASIC-0.11□□□□□ -2.43
COL9A1P20849 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.12□□□□□ -2.43
COL9A1P20849 MT-TQ-201ENST00000387372 72 ntBASIC-0.12□□□□□ -2.43
COL9A1P20849 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.12□□□□□ -2.43
COL9A1P20849 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-0.12□□□□□ -2.43
COL9A1P20849 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.13□□□□□ -2.43
COL9A1P20849 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.13□□□□□ -2.43
COL9A1P20849 Y_RNA.612-201ENST00000410717 95 ntBASIC-0.13□□□□□ -2.43
COL9A1P20849 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.13□□□□□ -2.43
COL9A1P20849 MIR4756-201ENST00000577874 78 ntBASIC-0.13□□□□□ -2.43
COL9A1P20849 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-0.13□□□□□ -2.43
COL9A1P20849 Y_RNA.652-201ENST00000458902 102 ntBASIC-0.14□□□□□ -2.43
COL9A1P20849 Y_RNA.165-201ENST00000363721 102 ntBASIC-0.15□□□□□ -2.43
COL9A1P20849 MIR4748-201ENST00000578076 82 ntBASIC-0.15□□□□□ -2.43
COL9A1P20849 MIR3139-201ENST00000579145 76 ntBASIC-0.15□□□□□ -2.43
COL9A1P20849 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.16□□□□□ -2.44
COL9A1P20849 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.16□□□□□ -2.44
COL9A1P20849 RNA5SP86-201ENST00000390869 98 ntBASIC-0.16□□□□□ -2.44
COL9A1P20849 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.17□□□□□ -2.44
COL9A1P20849 RNU6-1191P-201ENST00000516799 107 ntBASIC-0.17□□□□□ -2.44
COL9A1P20849 MIR4306-201ENST00000583390 91 ntBASIC-0.17□□□□□ -2.44
COL9A1P20849 uc_338.19-201ENST00000616808 99 ntBASIC-0.17□□□□□ -2.44
COL9A1P20849 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.18□□□□□ -2.44
COL9A1P20849 AC108019.1-201ENST00000512540 175 ntBASIC-0.18□□□□□ -2.44
COL9A1P20849 MIR4520-1-201ENST00000582609 70 ntBASIC-0.18□□□□□ -2.44
COL9A1P20849 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.19□□□□□ -2.44
COL9A1P20849 SNORD83B-201ENST00000386745 93 ntBASIC-0.19□□□□□ -2.44
COL9A1P20849 MT-TM-201ENST00000387377 68 ntBASIC-0.19□□□□□ -2.44
COL9A1P20849 RNU6-706P-201ENST00000517229 104 ntBASIC-0.19□□□□□ -2.44
COL9A1P20849 MIR5591-201ENST00000578248 65 ntBASIC-0.19□□□□□ -2.44
COL9A1P20849 MIRLET7A3-201ENST00000362116 74 ntBASIC-0.2□□□□□ -2.44
COL9A1P20849 SNORD18.1-201ENST00000363807 70 ntBASIC-0.2□□□□□ -2.44
COL9A1P20849 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.2□□□□□ -2.44
COL9A1P20849 HLA-S-202ENST00000425174 53 ntBASIC-0.21□□□□□ -2.44
COL9A1P20849 RNA5SP405-201ENST00000363059 114 ntBASIC-0.22□□□□□ -2.44
COL9A1P20849 RNU6-119P-201ENST00000364882 107 ntBASIC-0.22□□□□□ -2.44
COL9A1P20849 MIR664B-201ENST00000626756 61 ntBASIC-0.22□□□□□ -2.44
COL9A1P20849 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.23□□□□□ -2.45
COL9A1P20849 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.23□□□□□ -2.45
COL9A1P20849 SNX3P1Y-201ENST00000615757 176 ntBASIC-0.23□□□□□ -2.45
COL9A1P20849 Y_RNA.79-201ENST00000362992 113 ntBASIC-0.24□□□□□ -2.45
COL9A1P20849 RNU6-1121P-201ENST00000516802 109 ntBASIC-0.24□□□□□ -2.45
COL9A1P20849 RNA5SP449-201ENST00000516871 130 ntBASIC-0.24□□□□□ -2.45
COL9A1P20849 MIR3165-201ENST00000579874 75 ntBASIC-0.24□□□□□ -2.45
COL9A1P20849 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.24□□□□□ -2.45
COL9A1P20849 RNY4P9-201ENST00000363194 97 ntBASIC-0.25□□□□□ -2.45
COL9A1P20849 Y_RNA.397-201ENST00000383950 98 ntBASIC-0.25□□□□□ -2.45
COL9A1P20849 RNU6-803P-201ENST00000516034 102 ntBASIC-0.25□□□□□ -2.45
COL9A1P20849 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.26□□□□□ -2.45
COL9A1P20849 SNORD54-201ENST00000459159 67 ntBASIC-0.26□□□□□ -2.45
COL9A1P20849 MIR4770-201ENST00000579149 58 ntBASIC-0.26□□□□□ -2.45
COL9A1P20849 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.27□□□□□ -2.45
COL9A1P20849 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.27□□□□□ -2.45
COL9A1P20849 Y_RNA.566-201ENST00000384735 101 ntBASIC-0.28□□□□□ -2.45
COL9A1P20849 RNU6-230P-201ENST00000362457 104 ntBASIC-0.29□□□□□ -2.46
COL9A1P20849 RNY4P25-201ENST00000459254 96 ntBASIC-0.3□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms