Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SNORD54-201ENST00000459159 67 ntBASIC-1.24□□□□□ -2.61
LIG1P18858 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.24□□□□□ -2.61
LIG1P18858 MIR4770-201ENST00000579149 58 ntBASIC-1.25□□□□□ -2.61
LIG1P18858 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.27□□□□□ -2.61
LIG1P18858 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.27□□□□□ -2.61
LIG1P18858 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.27□□□□□ -2.61
LIG1P18858 FTX_4.1-201ENST00000616291 147 ntBASIC-1.27□□□□□ -2.61
LIG1P18858 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.28□□□□□ -2.61
LIG1P18858 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.28□□□□□ -2.61
LIG1P18858 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.28□□□□□ -2.61
LIG1P18858 RNU6-841P-201ENST00000383872 107 ntBASIC-1.3□□□□□ -2.62
LIG1P18858 snoU13.10-201ENST00000459301 103 ntBASIC-1.32□□□□□ -2.62
LIG1P18858 RNU6-345P-201ENST00000517001 107 ntBASIC-1.32□□□□□ -2.62
LIG1P18858 MIR548W-201ENST00000581970 74 ntBASIC-1.32□□□□□ -2.62
LIG1P18858 MIR4520-1-201ENST00000582609 70 ntBASIC-1.32□□□□□ -2.62
LIG1P18858 SNORD18.1-201ENST00000363807 70 ntBASIC-1.33□□□□□ -2.62
LIG1P18858 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.34□□□□□ -2.62
LIG1P18858 SNORD111B-201ENST00000408587 80 ntBASIC-1.35□□□□□ -2.63
LIG1P18858 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.38□□□□□ -2.63
LIG1P18858 RNA5SP86-201ENST00000390869 98 ntBASIC-1.38□□□□□ -2.63
LIG1P18858 SNORD45C-201ENST00000383893 79 ntBASIC-1.39□□□□□ -2.63
LIG1P18858 MIR548AM-201ENST00000584298 74 ntBASIC-1.39□□□□□ -2.63
LIG1P18858 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.4□□□□□ -2.63
LIG1P18858 MIR1254-1-201ENST00000408257 97 ntBASIC-1.4□□□□□ -2.63
LIG1P18858 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.41□□□□□ -2.64
LIG1P18858 RNU6-485P-201ENST00000363475 107 ntBASIC-1.42□□□□□ -2.64
LIG1P18858 MIR3139-201ENST00000579145 76 ntBASIC-1.42□□□□□ -2.64
LIG1P18858 MIR656-201ENST00000385224 78 ntBASIC-1.44□□□□□ -2.64
LIG1P18858 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.44□□□□□ -2.64
LIG1P18858 SNORD113-3-201ENST00000364830 72 ntBASIC-1.45□□□□□ -2.64
LIG1P18858 RNU6-133P-201ENST00000383989 107 ntBASIC-1.47□□□□□ -2.64
LIG1P18858 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.47□□□□□ -2.64
LIG1P18858 MIR487B-201ENST00000385021 84 ntBASIC-1.48□□□□□ -2.65
LIG1P18858 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.48□□□□□ -2.65
LIG1P18858 MT-TM-201ENST00000387377 68 ntBASIC-1.5□□□□□ -2.65
LIG1P18858 AC097484.2-201ENST00000509147 251 ntBASIC-1.5□□□□□ -2.65
LIG1P18858 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.5□□□□□ -2.65
LIG1P18858 MIR4756-201ENST00000577874 78 ntBASIC-1.52□□□□□ -2.65
LIG1P18858 MIR664B-201ENST00000626756 61 ntBASIC-1.52□□□□□ -2.65
LIG1P18858 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.53□□□□□ -2.65
LIG1P18858 AC108019.1-201ENST00000512540 175 ntBASIC-1.53□□□□□ -2.65
LIG1P18858 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.56□□□□□ -2.66
LIG1P18858 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.61□□□□□ -2.67
LIG1P18858 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.62□□□□□ -2.67
LIG1P18858 RNA5SP405-201ENST00000363059 114 ntBASIC-1.63□□□□□ -2.67
LIG1P18858 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.63□□□□□ -2.67
LIG1P18858 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.64□□□□□ -2.67
LIG1P18858 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.64□□□□□ -2.67
LIG1P18858 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.66□□□□□ -2.68
LIG1P18858 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.7□□□□□ -2.68
LIG1P18858 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.7□□□□□ -2.68
LIG1P18858 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.71□□□□□ -2.68
LIG1P18858 RNU6-1091P-201ENST00000363945 107 ntBASIC-1.72□□□□□ -2.68
LIG1P18858 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.72□□□□□ -2.68
LIG1P18858 RNU6-894P-201ENST00000517094 105 ntBASIC-1.74□□□□□ -2.69
LIG1P18858 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.79□□□□□ -2.7
LIG1P18858 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.8□□□□□ -2.7
LIG1P18858 RNU6-803P-201ENST00000516034 102 ntBASIC-1.8□□□□□ -2.7
LIG1P18858 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.81□□□□□ -2.7
LIG1P18858 RNU6-194P-201ENST00000363862 105 ntBASIC-1.83□□□□□ -2.7
LIG1P18858 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.83□□□□□ -2.7
LIG1P18858 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.84□□□□□ -2.7
LIG1P18858 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.84□□□□□ -2.7
LIG1P18858 RNU6-854P-201ENST00000364036 107 ntBASIC-1.87□□□□□ -2.71
LIG1P18858 MIR4748-201ENST00000578076 82 ntBASIC-1.89□□□□□ -2.71
LIG1P18858 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.9□□□□□ -2.71
LIG1P18858 RNU6-230P-201ENST00000362457 104 ntBASIC-1.95□□□□□ -2.72
LIG1P18858 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.02□□□□□ -2.73
LIG1P18858 RNU6-422P-201ENST00000384632 107 ntBASIC-2.04□□□□□ -2.74
LIG1P18858 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.04□□□□□ -2.74
LIG1P18858 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.06□□□□□ -2.74
LIG1P18858 AL731768.1-201ENST00000603124 139 ntBASIC-2.06□□□□□ -2.74
LIG1P18858 RNY4P9-201ENST00000363194 97 ntBASIC-2.11□□□□□ -2.75
LIG1P18858 RNU6-737P-201ENST00000365370 107 ntBASIC-2.11□□□□□ -2.75
LIG1P18858 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.11□□□□□ -2.75
LIG1P18858 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.19□□□□□ -2.76
LIG1P18858 RNA5SP106-201ENST00000517274 100 ntBASIC-2.19□□□□□ -2.76
LIG1P18858 MIR548T-201ENST00000408369 74 ntBASIC-2.23□□□□□ -2.77
LIG1P18858 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.23□□□□□ -2.77
LIG1P18858 MIR124-1-201ENST00000385275 85 ntBASIC-2.24□□□□□ -2.77
LIG1P18858 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.26□□□□□ -2.77
LIG1P18858 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.26□□□□□ -2.77
LIG1P18858 RNU6-620P-201ENST00000384017 96 ntBASIC-2.28□□□□□ -2.77
LIG1P18858 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.28□□□□□ -2.77
LIG1P18858 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.29□□□□□ -2.78
LIG1P18858 MIR5693-201ENST00000577722 73 ntBASIC-2.32□□□□□ -2.78
LIG1P18858 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.33□□□□□ -2.78
LIG1P18858 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.33□□□□□ -2.78
LIG1P18858 Y_RNA.520-201ENST00000384556 102 ntBASIC-2.33□□□□□ -2.78
LIG1P18858 AL359920.1-201ENST00000618332 176 ntBASIC-2.33□□□□□ -2.78
LIG1P18858 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.34□□□□□ -2.78
LIG1P18858 MIR509-1-201ENST00000385265 94 ntBASIC-2.34□□□□□ -2.78
LIG1P18858 MIR509-2-201ENST00000390724 91 ntBASIC-2.34□□□□□ -2.78
LIG1P18858 RNY4P10-201ENST00000365571 96 ntBASIC-2.37□□□□□ -2.79
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms