Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 RNA5SP405-201ENST00000363059 114 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 SNORD113-3-201ENST00000364830 72 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 MT-TM-201ENST00000387377 68 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.69□□□□□ -2.68
HOXD4P09016 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.69□□□□□ -2.68
HOXD4P09016 RNU6-822P-201ENST00000362707 106 ntBASIC-1.7□□□□□ -2.68
HOXD4P09016 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.7□□□□□ -2.68
HOXD4P09016 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.7□□□□□ -2.68
HOXD4P09016 RNU6-930P-201ENST00000390938 100 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.72□□□□□ -2.68
HOXD4P09016 MIR1254-1-201ENST00000408257 97 ntBASIC-1.73□□□□□ -2.69
HOXD4P09016 RNU6-194P-201ENST00000363862 105 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 MIR548F3-201ENST00000408509 87 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.75□□□□□ -2.69
HOXD4P09016 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.75□□□□□ -2.69
HOXD4P09016 RNU6-986P-201ENST00000363133 102 ntBASIC-1.76□□□□□ -2.69
HOXD4P09016 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.76□□□□□ -2.69
HOXD4P09016 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.77□□□□□ -2.69
HOXD4P09016 RNU6-345P-201ENST00000517001 107 ntBASIC-1.77□□□□□ -2.69
HOXD4P09016 FTX_4.1-201ENST00000616291 147 ntBASIC-1.77□□□□□ -2.69
HOXD4P09016 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.77□□□□□ -2.69
HOXD4P09016 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 SNORD115.2-201ENST00000391126 59 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 RNY4-201ENST00000516507 96 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.83□□□□□ -2.7
HOXD4P09016 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 RNU6-59P-201ENST00000384787 107 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 RNA5SP224-201ENST00000365069 126 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 MIR545-201ENST00000385085 106 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 MIR4748-201ENST00000578076 82 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 RNU6-836P-201ENST00000362920 107 ntBASIC-1.89□□□□□ -2.71
HOXD4P09016 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.91□□□□□ -2.72
HOXD4P09016 RNU6-141P-201ENST00000410499 105 ntBASIC-1.92□□□□□ -2.72
HOXD4P09016 SNORD45C-201ENST00000383893 79 ntBASIC-1.93□□□□□ -2.72
HOXD4P09016 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
HOXD4P09016 RNU6-987P-201ENST00000384759 104 ntBASIC-1.94□□□□□ -2.72
HOXD4P09016 MIR656-201ENST00000385224 78 ntBASIC-1.94□□□□□ -2.72
HOXD4P09016 RNU4-37P-201ENST00000410214 84 ntBASIC-1.95□□□□□ -2.72
HOXD4P09016 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.96□□□□□ -2.72
HOXD4P09016 RNU6-230P-201ENST00000362457 104 ntBASIC-1.99□□□□□ -2.73
HOXD4P09016 RNY4P9-201ENST00000363194 97 ntBASIC-1.99□□□□□ -2.73
HOXD4P09016 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.99□□□□□ -2.73
HOXD4P09016 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.01□□□□□ -2.73
HOXD4P09016 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.03□□□□□ -2.73
HOXD4P09016 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.04□□□□□ -2.74
HOXD4P09016 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.05□□□□□ -2.74
HOXD4P09016 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.09□□□□□ -2.74
HOXD4P09016 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.09□□□□□ -2.74
HOXD4P09016 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.1□□□□□ -2.75
HOXD4P09016 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.11□□□□□ -2.75
HOXD4P09016 AL731768.1-201ENST00000603124 139 ntBASIC-2.11□□□□□ -2.75
HOXD4P09016 RNU6-803P-201ENST00000516034 102 ntBASIC-2.12□□□□□ -2.75
HOXD4P09016 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.13□□□□□ -2.75
HOXD4P09016 RNU6-854P-201ENST00000364036 107 ntBASIC-2.15□□□□□ -2.75
HOXD4P09016 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.19□□□□□ -2.76
HOXD4P09016 RNU6-737P-201ENST00000365370 107 ntBASIC-2.19□□□□□ -2.76
HOXD4P09016 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.22□□□□□ -2.76
HOXD4P09016 U6.103-201ENST00000637085 61 ntBASIC-2.22□□□□□ -2.76
HOXD4P09016 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.29□□□□□ -2.78
HOXD4P09016 SNORD111B-201ENST00000408587 80 ntBASIC-2.29□□□□□ -2.78
HOXD4P09016 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.3□□□□□ -2.78
HOXD4P09016 MIR5693-201ENST00000577722 73 ntBASIC-2.3□□□□□ -2.78
HOXD4P09016 AL359920.1-201ENST00000618332 176 ntBASIC-2.31□□□□□ -2.78
HOXD4P09016 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.32□□□□□ -2.78
HOXD4P09016 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.33□□□□□ -2.78
HOXD4P09016 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.33□□□□□ -2.78
HOXD4P09016 RNY4P25-201ENST00000459254 96 ntBASIC-2.33□□□□□ -2.78
HOXD4P09016 RNU6-422P-201ENST00000384632 107 ntBASIC-2.34□□□□□ -2.78
HOXD4P09016 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.36□□□□□ -2.79
HOXD4P09016 MIR124-1-201ENST00000385275 85 ntBASIC-2.37□□□□□ -2.79
HOXD4P09016 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 MIR509-1-201ENST00000385265 94 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 MIR509-2-201ENST00000390724 91 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 RNA5SP106-201ENST00000517274 100 ntBASIC-2.4□□□□□ -2.79
HOXD4P09016 RNU6-485P-201ENST00000363475 107 ntBASIC-2.41□□□□□ -2.8
HOXD4P09016 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.41□□□□□ -2.8
HOXD4P09016 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.43□□□□□ -2.8
HOXD4P09016 RNU6-724P-201ENST00000390958 105 ntBASIC-2.44□□□□□ -2.8
HOXD4P09016 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.44□□□□□ -2.8
HOXD4P09016 RNY4P10-201ENST00000365571 96 ntBASIC-2.45□□□□□ -2.8
HOXD4P09016 SNORD115-45-201ENST00000391078 81 ntBASIC-2.47□□□□□ -2.8
HOXD4P09016 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.47□□□□□ -2.8
HOXD4P09016 MIR548AH-201ENST00000637109 76 ntBASIC-2.48□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 243.8 ms