Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 AC108019.1-201ENST00000512540 175 ntBASIC-1.86□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.87□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 AL627230.5-201ENST00000619807 58 ntBASIC-1.87□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 MIR4441-201ENST00000582623 100 ntBASIC-1.88□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.89□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 MIR656-201ENST00000385224 78 ntBASIC-1.89□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 MIR365A-201ENST00000362260 87 ntBASIC-1.91□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 MIR4756-201ENST00000577874 78 ntBASIC-1.91□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 MIR664B-201ENST00000626756 61 ntBASIC-1.93□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.94□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 MIR198-201ENST00000637333 62 ntBASIC-1.94□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 SNORD111B-201ENST00000408587 80 ntBASIC-1.95□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.95□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 MIR601-201ENST00000385256 79 ntBASIC-1.96□□□□□ -2.72
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.225-201ENST00000364326 97 ntBASIC-2□□□□□ -2.73
NPHP3-ACAD11A0A0J9YXS1 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.02□□□□□ -2.73
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.02□□□□□ -2.73
NPHP3-ACAD11A0A0J9YXS1 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.02□□□□□ -2.73
NPHP3-ACAD11A0A0J9YXS1 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.04□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-2.04□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.05□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 RNU6-485P-201ENST00000363475 107 ntBASIC-2.07□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.08□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 RNA5SP405-201ENST00000363059 114 ntBASIC-2.09□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.09□□□□□ -2.74
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.1□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.11□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.12□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 RNU6-194P-201ENST00000363862 105 ntBASIC-2.14□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.14□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 RNU6-118P-201ENST00000516552 102 ntBASIC-2.14□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 MIR3139-201ENST00000579145 76 ntBASIC-2.15□□□□□ -2.75
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.16□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.413-201ENST00000384007 102 ntBASIC-2.17□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.754-201ENST00000476024 102 ntBASIC-2.17□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.790-201ENST00000614282 102 ntBASIC-2.17□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.782-201ENST00000614695 102 ntBASIC-2.17□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 RNY4P27-201ENST00000363341 96 ntBASIC-2.18□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 MIR4748-201ENST00000578076 82 ntBASIC-2.18□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.2□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 U4.2-201ENST00000618561 85 ntBASIC-2.2□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 SNORD114-3-201ENST00000364969 75 ntBASIC-2.22□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 RNU6-133P-201ENST00000383989 107 ntBASIC-2.22□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.22□□□□□ -2.76
NPHP3-ACAD11A0A0J9YXS1 MT-TM-201ENST00000387377 68 ntBASIC-2.24□□□□□ -2.77
NPHP3-ACAD11A0A0J9YXS1 RNU6-854P-201ENST00000364036 107 ntBASIC-2.25□□□□□ -2.77
NPHP3-ACAD11A0A0J9YXS1 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.27□□□□□ -2.77
NPHP3-ACAD11A0A0J9YXS1 RNU6-119P-201ENST00000364882 107 ntBASIC-2.28□□□□□ -2.77
NPHP3-ACAD11A0A0J9YXS1 MIR496-201ENST00000385226 102 ntBASIC-2.28□□□□□ -2.77
NPHP3-ACAD11A0A0J9YXS1 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.29□□□□□ -2.78
NPHP3-ACAD11A0A0J9YXS1 RNY4P9-201ENST00000363194 97 ntBASIC-2.35□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.35□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.35□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 MIR4723-201ENST00000585070 81 ntBASIC-2.35□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.36□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 AL731768.1-201ENST00000603124 139 ntBASIC-2.39□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 RNU6-737P-201ENST00000365370 107 ntBASIC-2.4□□□□□ -2.79
NPHP3-ACAD11A0A0J9YXS1 SNORD54-201ENST00000459159 67 ntBASIC-2.41□□□□□ -2.8
NPHP3-ACAD11A0A0J9YXS1 RNU6-422P-201ENST00000384632 107 ntBASIC-2.45□□□□□ -2.8
NPHP3-ACAD11A0A0J9YXS1 MIR1207-201ENST00000408249 87 ntBASIC-2.45□□□□□ -2.8
NPHP3-ACAD11A0A0J9YXS1 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.47□□□□□ -2.8
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.48□□□□□ -2.81
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.51□□□□□ -2.81
NPHP3-ACAD11A0A0J9YXS1 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.53□□□□□ -2.81
NPHP3-ACAD11A0A0J9YXS1 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.54□□□□□ -2.82
NPHP3-ACAD11A0A0J9YXS1 RNA5SP93-201ENST00000362525 114 ntBASIC-2.57□□□□□ -2.82
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.57□□□□□ -2.82
NPHP3-ACAD11A0A0J9YXS1 RNU6-230P-201ENST00000362457 104 ntBASIC-2.59□□□□□ -2.82
NPHP3-ACAD11A0A0J9YXS1 MIR124-1-201ENST00000385275 85 ntBASIC-2.6□□□□□ -2.83
NPHP3-ACAD11A0A0J9YXS1 RNU6-894P-201ENST00000517094 105 ntBASIC-2.6□□□□□ -2.83
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.61□□□□□ -2.83
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.61□□□□□ -2.83
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.64□□□□□ -2.83
NPHP3-ACAD11A0A0J9YXS1 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.64□□□□□ -2.83
NPHP3-ACAD11A0A0J9YXS1 AL359920.1-201ENST00000618332 176 ntBASIC-2.67□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.69□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.69□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.7□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.71□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.72□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.72□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.72□□□□□ -2.84
NPHP3-ACAD11A0A0J9YXS1 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.73□□□□□ -2.85
NPHP3-ACAD11A0A0J9YXS1 RNY4P25-201ENST00000459254 96 ntBASIC-2.76□□□□□ -2.85
NPHP3-ACAD11A0A0J9YXS1 MIR5693-201ENST00000577722 73 ntBASIC-2.76□□□□□ -2.85
NPHP3-ACAD11A0A0J9YXS1 RNU6-620P-201ENST00000384017 96 ntBASIC-2.78□□□□□ -2.85
NPHP3-ACAD11A0A0J9YXS1 MIR548AH-201ENST00000637109 76 ntBASIC-2.78□□□□□ -2.85
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.79□□□□□ -2.86
NPHP3-ACAD11A0A0J9YXS1 SNORD115-45-201ENST00000391078 81 ntBASIC-2.84□□□□□ -2.86
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.86□□□□□ -2.87
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.87□□□□□ -2.87
NPHP3-ACAD11A0A0J9YXS1 RNY4P7-201ENST00000364600 96 ntBASIC-2.87□□□□□ -2.87
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.89□□□□□ -2.87
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.91□□□□□ -2.88
NPHP3-ACAD11A0A0J9YXS1 MIR548T-201ENST00000408369 74 ntBASIC-2.96□□□□□ -2.88
NPHP3-ACAD11A0A0J9YXS1 RNU6-627P-201ENST00000364032 102 ntBASIC-2.97□□□□□ -2.88
NPHP3-ACAD11A0A0J9YXS1 RNU6-803P-201ENST00000516034 102 ntBASIC-2.97□□□□□ -2.88
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.99□□□□□ -2.89
NPHP3-ACAD11A0A0J9YXS1 RNY4-201ENST00000516507 96 ntBASIC-3□□□□□ -2.89
NPHP3-ACAD11A0A0J9YXS1 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.02□□□□□ -2.89
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms