Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 AC108019.1-201ENST00000512540 175 ntBASIC-1.26□□□□□ -2.61
CDK11AQ9UQ88 RNU6-419P-201ENST00000517030 63 ntBASIC-1.26□□□□□ -2.61
CDK11AQ9UQ88 AC114801.3-201ENST00000510231 177 ntBASIC-1.27□□□□□ -2.61
CDK11AQ9UQ88 RNA5SP461-201ENST00000516451 104 ntBASIC-1.27□□□□□ -2.61
CDK11AQ9UQ88 SNORD113-4-201ENST00000364802 75 ntBASIC-1.28□□□□□ -2.61
CDK11AQ9UQ88 RNU6-471P-201ENST00000383944 106 ntBASIC-1.28□□□□□ -2.61
CDK11AQ9UQ88 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.28□□□□□ -2.61
CDK11AQ9UQ88 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.29□□□□□ -2.62
CDK11AQ9UQ88 SNORD18C-201ENST00000362704 69 ntBASIC-1.29□□□□□ -2.62
CDK11AQ9UQ88 SNORD18.1-201ENST00000363807 70 ntBASIC-1.29□□□□□ -2.62
CDK11AQ9UQ88 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.29□□□□□ -2.62
CDK11AQ9UQ88 RNU4-88P-201ENST00000411220 86 ntBASIC-1.29□□□□□ -2.62
CDK11AQ9UQ88 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.3□□□□□ -2.62
CDK11AQ9UQ88 MIR4426-201ENST00000640330 63 ntBASIC-1.3□□□□□ -2.62
CDK11AQ9UQ88 SNORD60-201ENST00000383903 83 ntBASIC-1.31□□□□□ -2.62
CDK11AQ9UQ88 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.31□□□□□ -2.62
CDK11AQ9UQ88 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.31□□□□□ -2.62
CDK11AQ9UQ88 RNU6-638P-201ENST00000516582 104 ntBASIC-1.32□□□□□ -2.62
CDK11AQ9UQ88 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.34□□□□□ -2.62
CDK11AQ9UQ88 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.34□□□□□ -2.62
CDK11AQ9UQ88 RNU6-912P-201ENST00000363800 104 ntBASIC-1.35□□□□□ -2.63
CDK11AQ9UQ88 MIR633-201ENST00000384821 98 ntBASIC-1.35□□□□□ -2.63
CDK11AQ9UQ88 SNX3P1X-201ENST00000414887 175 ntBASIC-1.35□□□□□ -2.63
CDK11AQ9UQ88 MIR548X-201ENST00000580069 75 ntBASIC-1.35□□□□□ -2.63
CDK11AQ9UQ88 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.36□□□□□ -2.63
CDK11AQ9UQ88 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.36□□□□□ -2.63
CDK11AQ9UQ88 RNU6-829P-201ENST00000363700 112 ntBASIC-1.37□□□□□ -2.63
CDK11AQ9UQ88 RNU6-590P-201ENST00000365039 107 ntBASIC-1.37□□□□□ -2.63
CDK11AQ9UQ88 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.37□□□□□ -2.63
CDK11AQ9UQ88 RNU6-300P-201ENST00000459080 104 ntBASIC-1.37□□□□□ -2.63
CDK11AQ9UQ88 RNU6-980P-201ENST00000516925 103 ntBASIC-1.37□□□□□ -2.63
CDK11AQ9UQ88 MIR1246-201ENST00000636535 73 ntBASIC-1.37□□□□□ -2.63
CDK11AQ9UQ88 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.38□□□□□ -2.63
CDK11AQ9UQ88 MIR4320-201ENST00000636981 65 ntBASIC-1.38□□□□□ -2.63
CDK11AQ9UQ88 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.39□□□□□ -2.63
CDK11AQ9UQ88 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.39□□□□□ -2.63
CDK11AQ9UQ88 SNORD113-3-201ENST00000364830 72 ntBASIC-1.39□□□□□ -2.63
CDK11AQ9UQ88 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.39□□□□□ -2.63
CDK11AQ9UQ88 RNU6-983P-201ENST00000516004 103 ntBASIC-1.39□□□□□ -2.63
CDK11AQ9UQ88 MIR664B-201ENST00000626756 61 ntBASIC-1.39□□□□□ -2.63
CDK11AQ9UQ88 SNORD45.2-201ENST00000363552 72 ntBASIC-1.4□□□□□ -2.63
CDK11AQ9UQ88 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.42□□□□□ -2.64
CDK11AQ9UQ88 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.42□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.43□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.43□□□□□ -2.64
CDK11AQ9UQ88 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.43□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.44□□□□□ -2.64
CDK11AQ9UQ88 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.44□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.44□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.45□□□□□ -2.64
CDK11AQ9UQ88 AC097484.2-201ENST00000509147 251 ntBASIC-1.45□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.46□□□□□ -2.64
CDK11AQ9UQ88 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.46□□□□□ -2.64
CDK11AQ9UQ88 MIR379-201ENST00000362218 67 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 AC139453.2-201ENST00000487255 133 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.47□□□□□ -2.64
CDK11AQ9UQ88 RNU4-33P-201ENST00000364316 85 ntBASIC-1.48□□□□□ -2.65
CDK11AQ9UQ88 MIR1254-1-201ENST00000408257 97 ntBASIC-1.48□□□□□ -2.65
CDK11AQ9UQ88 MIR548H4-201ENST00000408689 111 ntBASIC-1.48□□□□□ -2.65
CDK11AQ9UQ88 AC079150.2-201ENST00000443733 78 ntBASIC-1.48□□□□□ -2.65
CDK11AQ9UQ88 RNA5SP180-201ENST00000516181 101 ntBASIC-1.48□□□□□ -2.65
CDK11AQ9UQ88 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.49□□□□□ -2.65
CDK11AQ9UQ88 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.49□□□□□ -2.65
CDK11AQ9UQ88 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.5□□□□□ -2.65
CDK11AQ9UQ88 MIR601-201ENST00000385256 79 ntBASIC-1.5□□□□□ -2.65
CDK11AQ9UQ88 RNU6-118P-201ENST00000516552 102 ntBASIC-1.5□□□□□ -2.65
CDK11AQ9UQ88 RNU6-176P-201ENST00000517196 105 ntBASIC-1.5□□□□□ -2.65
CDK11AQ9UQ88 RNA5SP405-201ENST00000363059 114 ntBASIC-1.51□□□□□ -2.65
CDK11AQ9UQ88 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.51□□□□□ -2.65
CDK11AQ9UQ88 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.51□□□□□ -2.65
CDK11AQ9UQ88 FTX_4.1-201ENST00000616291 147 ntBASIC-1.52□□□□□ -2.65
CDK11AQ9UQ88 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.53□□□□□ -2.65
CDK11AQ9UQ88 AC125388.1-201ENST00000459631 156 ntBASIC-1.53□□□□□ -2.65
CDK11AQ9UQ88 MIR4748-201ENST00000578076 82 ntBASIC-1.53□□□□□ -2.65
CDK11AQ9UQ88 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.54□□□□□ -2.66
CDK11AQ9UQ88 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.54□□□□□ -2.66
CDK11AQ9UQ88 MIR548AL-201ENST00000578416 97 ntBASIC-1.54□□□□□ -2.66
CDK11AQ9UQ88 MIR198-201ENST00000637333 62 ntBASIC-1.54□□□□□ -2.66
CDK11AQ9UQ88 RNU6-194P-201ENST00000363862 105 ntBASIC-1.55□□□□□ -2.66
CDK11AQ9UQ88 RNU6-141P-201ENST00000410499 105 ntBASIC-1.55□□□□□ -2.66
CDK11AQ9UQ88 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.57□□□□□ -2.66
CDK11AQ9UQ88 MIR1285-2-201ENST00000408311 88 ntBASIC-1.59□□□□□ -2.66
CDK11AQ9UQ88 RNU6-499P-201ENST00000365615 107 ntBASIC-1.6□□□□□ -2.67
CDK11AQ9UQ88 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.6□□□□□ -2.67
CDK11AQ9UQ88 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.6□□□□□ -2.67
CDK11AQ9UQ88 MIR4317-201ENST00000637586 65 ntBASIC-1.6□□□□□ -2.67
CDK11AQ9UQ88 MIR3139-201ENST00000579145 76 ntBASIC-1.61□□□□□ -2.67
CDK11AQ9UQ88 RNU6-986P-201ENST00000363133 102 ntBASIC-1.62□□□□□ -2.67
CDK11AQ9UQ88 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.63□□□□□ -2.67
CDK11AQ9UQ88 RNU6-345P-201ENST00000517001 107 ntBASIC-1.63□□□□□ -2.67
CDK11AQ9UQ88 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.64□□□□□ -2.67
CDK11AQ9UQ88 RNU6-838P-201ENST00000363399 108 ntBASIC-1.65□□□□□ -2.67
CDK11AQ9UQ88 RNU6-753P-201ENST00000363926 107 ntBASIC-1.65□□□□□ -2.67
CDK11AQ9UQ88 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.65□□□□□ -2.67
CDK11AQ9UQ88 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.66□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms