Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR6086-201ENST00000638065 55 ntBASIC-0.31□□□□□ -2.46
CCDC39Q9UFE4 SNORD45C-201ENST00000383893 79 ntBASIC-0.32□□□□□ -2.46
CCDC39Q9UFE4 RNU6-320P-201ENST00000516511 106 ntBASIC-0.32□□□□□ -2.46
CCDC39Q9UFE4 RNA5SP476-201ENST00000516613 103 ntBASIC-0.32□□□□□ -2.46
CCDC39Q9UFE4 RNU6-1091P-201ENST00000363945 107 ntBASIC-0.33□□□□□ -2.46
CCDC39Q9UFE4 AL500527.2-201ENST00000454105 95 ntBASIC-0.33□□□□□ -2.46
CCDC39Q9UFE4 SNORD114-28-201ENST00000363610 72 ntBASIC-0.34□□□□□ -2.46
CCDC39Q9UFE4 Y_RNA.335-201ENST00000365299 96 ntBASIC-0.35□□□□□ -2.47
CCDC39Q9UFE4 MIR101-1-201ENST00000362265 75 ntBASIC-0.36□□□□□ -2.47
CCDC39Q9UFE4 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.36□□□□□ -2.47
CCDC39Q9UFE4 MIR6874-201ENST00000635894 71 ntBASIC-0.36□□□□□ -2.47
CCDC39Q9UFE4 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.38□□□□□ -2.47
CCDC39Q9UFE4 AC091912.2-201ENST00000624798 167 ntBASIC-0.38□□□□□ -2.47
CCDC39Q9UFE4 HAR1A.1-201ENST00000459583 118 ntBASIC-0.39□□□□□ -2.47
CCDC39Q9UFE4 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.39□□□□□ -2.47
CCDC39Q9UFE4 Y_RNA.406-201ENST00000383984 100 ntBASIC-0.4□□□□□ -2.47
CCDC39Q9UFE4 MIR604-201ENST00000384880 94 ntBASIC-0.4□□□□□ -2.47
CCDC39Q9UFE4 RNU6-576P-201ENST00000390854 102 ntBASIC-0.4□□□□□ -2.47
CCDC39Q9UFE4 RNU6-758P-201ENST00000516292 89 ntBASIC-0.4□□□□□ -2.47
CCDC39Q9UFE4 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
CCDC39Q9UFE4 RNA5SP275-201ENST00000363936 118 ntBASIC-0.41□□□□□ -2.48
CCDC39Q9UFE4 RNA5SP368-201ENST00000364298 116 ntBASIC-0.41□□□□□ -2.48
CCDC39Q9UFE4 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.41□□□□□ -2.48
CCDC39Q9UFE4 MIR1254-1-201ENST00000408257 97 ntBASIC-0.42□□□□□ -2.48
CCDC39Q9UFE4 RNU6-400P-201ENST00000391173 106 ntBASIC-0.43□□□□□ -2.48
CCDC39Q9UFE4 RNU6-345P-201ENST00000517001 107 ntBASIC-0.43□□□□□ -2.48
CCDC39Q9UFE4 MIR656-201ENST00000385224 78 ntBASIC-0.44□□□□□ -2.48
CCDC39Q9UFE4 MIR548H1-201ENST00000408610 102 ntBASIC-0.44□□□□□ -2.48
CCDC39Q9UFE4 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.45□□□□□ -2.48
CCDC39Q9UFE4 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.46□□□□□ -2.48
CCDC39Q9UFE4 RNA5SP25-201ENST00000410815 110 ntBASIC-0.46□□□□□ -2.48
CCDC39Q9UFE4 SNORD95.1-201ENST00000364099 68 ntBASIC-0.47□□□□□ -2.48
CCDC39Q9UFE4 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.47□□□□□ -2.48
CCDC39Q9UFE4 RNA5SP451-201ENST00000410588 110 ntBASIC-0.47□□□□□ -2.48
CCDC39Q9UFE4 SNORA32.3-201ENST00000384772 121 ntBASIC-0.49□□□□□ -2.49
CCDC39Q9UFE4 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.5□□□□□ -2.49
CCDC39Q9UFE4 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.51□□□□□ -2.49
CCDC39Q9UFE4 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.51□□□□□ -2.49
CCDC39Q9UFE4 MIR3123-201ENST00000583417 75 ntBASIC-0.51□□□□□ -2.49
CCDC39Q9UFE4 MIR548AZ-201ENST00000616567 95 ntBASIC-0.51□□□□□ -2.49
CCDC39Q9UFE4 snoU13.10-201ENST00000459301 103 ntBASIC-0.53□□□□□ -2.49
CCDC39Q9UFE4 MIR548W-201ENST00000581970 74 ntBASIC-0.53□□□□□ -2.49
CCDC39Q9UFE4 RNU6-30P-201ENST00000384561 107 ntBASIC-0.54□□□□□ -2.5
CCDC39Q9UFE4 MIR224-201ENST00000384889 81 ntBASIC-0.54□□□□□ -2.5
CCDC39Q9UFE4 RPS29P8-201ENST00000445109 171 ntBASIC-0.54□□□□□ -2.5
CCDC39Q9UFE4 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.54□□□□□ -2.5
CCDC39Q9UFE4 snoU13.19-201ENST00000459148 104 ntBASIC-0.55□□□□□ -2.5
CCDC39Q9UFE4 SNORD113-3-201ENST00000364830 72 ntBASIC-0.56□□□□□ -2.5
CCDC39Q9UFE4 SNORD114-15-201ENST00000364687 72 ntBASIC-0.57□□□□□ -2.5
CCDC39Q9UFE4 RNU6-1340P-201ENST00000384438 107 ntBASIC-0.57□□□□□ -2.5
CCDC39Q9UFE4 MIR548T-201ENST00000408369 74 ntBASIC-0.58□□□□□ -2.5
CCDC39Q9UFE4 MIR4499-201ENST00000584834 69 ntBASIC-0.59□□□□□ -2.5
CCDC39Q9UFE4 uc_338.19-201ENST00000616808 99 ntBASIC-0.59□□□□□ -2.5
CCDC39Q9UFE4 MIR8485-201ENST00000401372 91 ntBASIC-0.6□□□□□ -2.51
CCDC39Q9UFE4 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.61□□□□□ -2.51
CCDC39Q9UFE4 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.61□□□□□ -2.51
CCDC39Q9UFE4 MIR196A1-201ENST00000388006 70 ntBASIC-0.62□□□□□ -2.51
CCDC39Q9UFE4 MT-TQ-201ENST00000387372 72 ntBASIC-0.65□□□□□ -2.51
CCDC39Q9UFE4 RNU4-63P-201ENST00000411313 118 ntBASIC-0.65□□□□□ -2.51
CCDC39Q9UFE4 MIR548AX-201ENST00000580117 73 ntBASIC-0.65□□□□□ -2.51
CCDC39Q9UFE4 RNU6-841P-201ENST00000383872 107 ntBASIC-0.66□□□□□ -2.52
CCDC39Q9UFE4 MIR6502-201ENST00000617296 76 ntBASIC-0.66□□□□□ -2.52
CCDC39Q9UFE4 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.69□□□□□ -2.52
CCDC39Q9UFE4 MIR3681-201ENST00000580089 72 ntBASIC-0.69□□□□□ -2.52
CCDC39Q9UFE4 SNORD83B-201ENST00000386745 93 ntBASIC-0.7□□□□□ -2.52
CCDC39Q9UFE4 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.71□□□□□ -2.52
CCDC39Q9UFE4 AC097484.2-201ENST00000509147 251 ntBASIC-0.72□□□□□ -2.52
CCDC39Q9UFE4 MIR548AM-201ENST00000584298 74 ntBASIC-0.72□□□□□ -2.52
CCDC39Q9UFE4 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.73□□□□□ -2.53
CCDC39Q9UFE4 MIR409-201ENST00000362237 79 ntBASIC-0.74□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.75□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.75□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.75□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.75□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.75□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.75□□□□□ -2.53
CCDC39Q9UFE4 RNU6-854P-201ENST00000364036 107 ntBASIC-0.76□□□□□ -2.53
CCDC39Q9UFE4 RNU6-983P-201ENST00000516004 103 ntBASIC-0.76□□□□□ -2.53
CCDC39Q9UFE4 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.76□□□□□ -2.53
CCDC39Q9UFE4 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.78□□□□□ -2.53
CCDC39Q9UFE4 MIR4520-1-201ENST00000582609 70 ntBASIC-0.79□□□□□ -2.54
CCDC39Q9UFE4 AL627230.5-201ENST00000619807 58 ntBASIC-0.82□□□□□ -2.54
CCDC39Q9UFE4 RNA5SP266-201ENST00000410273 108 ntBASIC-0.84□□□□□ -2.54
CCDC39Q9UFE4 MIR378F-201ENST00000578143 78 ntBASIC-0.84□□□□□ -2.54
CCDC39Q9UFE4 RNA5SP331-201ENST00000364986 107 ntBASIC-0.85□□□□□ -2.55
CCDC39Q9UFE4 RNU6-620P-201ENST00000384017 96 ntBASIC-0.85□□□□□ -2.55
CCDC39Q9UFE4 RNU6-422P-201ENST00000384632 107 ntBASIC-0.85□□□□□ -2.55
CCDC39Q9UFE4 MIR487B-201ENST00000385021 84 ntBASIC-0.85□□□□□ -2.55
CCDC39Q9UFE4 RNU6-1043P-201ENST00000410355 99 ntBASIC-0.85□□□□□ -2.55
CCDC39Q9UFE4 RNU6-1024P-201ENST00000384199 107 ntBASIC-0.86□□□□□ -2.55
CCDC39Q9UFE4 MIR4306-201ENST00000583390 91 ntBASIC-0.9□□□□□ -2.55
CCDC39Q9UFE4 RNA5SP86-201ENST00000390869 98 ntBASIC-0.91□□□□□ -2.56
CCDC39Q9UFE4 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.92□□□□□ -2.56
CCDC39Q9UFE4 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.93□□□□□ -2.56
CCDC39Q9UFE4 MIR587-201ENST00000384845 96 ntBASIC-0.94□□□□□ -2.56
CCDC39Q9UFE4 SCARNA17-201ENST00000516183 144 ntBASIC-0.95□□□□□ -2.56
CCDC39Q9UFE4 Y_RNA.59-201ENST00000362828 102 ntBASIC-0.99□□□□□ -2.57
CCDC39Q9UFE4 RNU6-737P-201ENST00000365370 107 ntBASIC-0.99□□□□□ -2.57
CCDC39Q9UFE4 Y_RNA.583-201ENST00000391033 113 ntBASIC-1□□□□□ -2.57
CCDC39Q9UFE4 MIR6738-201ENST00000619620 64 ntBASIC-1□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 251.5 ms