Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.24□□□□□ -2.61
UPF3AQ9H1J1 RNU6-530P-201ENST00000391180 107 ntBASIC-1.25□□□□□ -2.61
UPF3AQ9H1J1 MIR202-201ENST00000362219 110 ntBASIC-1.26□□□□□ -2.61
UPF3AQ9H1J1 MIR4520-1-201ENST00000582609 70 ntBASIC-1.26□□□□□ -2.61
UPF3AQ9H1J1 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.27□□□□□ -2.61
UPF3AQ9H1J1 MIR548X-201ENST00000580069 75 ntBASIC-1.27□□□□□ -2.61
UPF3AQ9H1J1 AC079150.2-201ENST00000443733 78 ntBASIC-1.28□□□□□ -2.61
UPF3AQ9H1J1 MIR4770-201ENST00000579149 58 ntBASIC-1.28□□□□□ -2.61
UPF3AQ9H1J1 RNU6-361P-201ENST00000364454 107 ntBASIC-1.29□□□□□ -2.62
UPF3AQ9H1J1 MIR581-201ENST00000384895 96 ntBASIC-1.29□□□□□ -2.62
UPF3AQ9H1J1 MIR1285-2-201ENST00000408311 88 ntBASIC-1.29□□□□□ -2.62
UPF3AQ9H1J1 U6.97-201ENST00000636904 101 ntBASIC-1.29□□□□□ -2.62
UPF3AQ9H1J1 RNA5SP180-201ENST00000516181 101 ntBASIC-1.3□□□□□ -2.62
UPF3AQ9H1J1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.31□□□□□ -2.62
UPF3AQ9H1J1 MIR4441-201ENST00000582623 100 ntBASIC-1.31□□□□□ -2.62
UPF3AQ9H1J1 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.32□□□□□ -2.62
UPF3AQ9H1J1 SNORD45.2-201ENST00000363552 72 ntBASIC-1.32□□□□□ -2.62
UPF3AQ9H1J1 MIR548N-201ENST00000408742 75 ntBASIC-1.32□□□□□ -2.62
UPF3AQ9H1J1 SNORA17.4-201ENST00000391287 132 ntBASIC-1.33□□□□□ -2.62
UPF3AQ9H1J1 MIR1246-201ENST00000636535 73 ntBASIC-1.33□□□□□ -2.62
UPF3AQ9H1J1 RNU6-742P-201ENST00000365289 107 ntBASIC-1.34□□□□□ -2.62
UPF3AQ9H1J1 RNA5SP86-201ENST00000390869 98 ntBASIC-1.34□□□□□ -2.62
UPF3AQ9H1J1 RNU6-695P-201ENST00000391157 104 ntBASIC-1.34□□□□□ -2.62
UPF3AQ9H1J1 RNU6-499P-201ENST00000365615 107 ntBASIC-1.35□□□□□ -2.63
UPF3AQ9H1J1 RNU6-980P-201ENST00000516925 103 ntBASIC-1.35□□□□□ -2.63
UPF3AQ9H1J1 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.35□□□□□ -2.63
UPF3AQ9H1J1 MIR4426-201ENST00000640330 63 ntBASIC-1.35□□□□□ -2.63
UPF3AQ9H1J1 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.36□□□□□ -2.63
UPF3AQ9H1J1 SNORD60-201ENST00000383903 83 ntBASIC-1.36□□□□□ -2.63
UPF3AQ9H1J1 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.37□□□□□ -2.63
UPF3AQ9H1J1 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.38□□□□□ -2.63
UPF3AQ9H1J1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.38□□□□□ -2.63
UPF3AQ9H1J1 RNU6-788P-201ENST00000390967 104 ntBASIC-1.38□□□□□ -2.63
UPF3AQ9H1J1 MIR3123-201ENST00000583417 75 ntBASIC-1.38□□□□□ -2.63
UPF3AQ9H1J1 SNORD18C-201ENST00000362704 69 ntBASIC-1.41□□□□□ -2.64
UPF3AQ9H1J1 RNU4-33P-201ENST00000364316 85 ntBASIC-1.41□□□□□ -2.64
UPF3AQ9H1J1 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.41□□□□□ -2.64
UPF3AQ9H1J1 MIR487B-201ENST00000385021 84 ntBASIC-1.42□□□□□ -2.64
UPF3AQ9H1J1 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 RNY4P27-201ENST00000363341 96 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 SNORD18.1-201ENST00000363807 70 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 MIR548H1-201ENST00000408610 102 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 RNU6-983P-201ENST00000516004 103 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 RNU6-68P-201ENST00000516576 104 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.43□□□□□ -2.64
UPF3AQ9H1J1 RNU6-300P-201ENST00000459080 104 ntBASIC-1.44□□□□□ -2.64
UPF3AQ9H1J1 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.47□□□□□ -2.64
UPF3AQ9H1J1 RNU6-841P-201ENST00000383872 107 ntBASIC-1.48□□□□□ -2.65
UPF3AQ9H1J1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.48□□□□□ -2.65
UPF3AQ9H1J1 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.49□□□□□ -2.65
UPF3AQ9H1J1 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.5□□□□□ -2.65
UPF3AQ9H1J1 MIR548W-201ENST00000581970 74 ntBASIC-1.5□□□□□ -2.65
UPF3AQ9H1J1 AC108019.1-201ENST00000512540 175 ntBASIC-1.51□□□□□ -2.65
UPF3AQ9H1J1 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.51□□□□□ -2.65
UPF3AQ9H1J1 MIR548AM-201ENST00000584298 74 ntBASIC-1.51□□□□□ -2.65
UPF3AQ9H1J1 RNU6-176P-201ENST00000517196 105 ntBASIC-1.52□□□□□ -2.65
UPF3AQ9H1J1 snoU13.10-201ENST00000459301 103 ntBASIC-1.53□□□□□ -2.65
UPF3AQ9H1J1 MIR4756-201ENST00000577874 78 ntBASIC-1.53□□□□□ -2.65
UPF3AQ9H1J1 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.55□□□□□ -2.66
UPF3AQ9H1J1 MIR548H4-201ENST00000408689 111 ntBASIC-1.55□□□□□ -2.66
UPF3AQ9H1J1 MIR548AL-201ENST00000578416 97 ntBASIC-1.55□□□□□ -2.66
UPF3AQ9H1J1 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.56□□□□□ -2.66
UPF3AQ9H1J1 RNU6-936P-201ENST00000384005 107 ntBASIC-1.56□□□□□ -2.66
UPF3AQ9H1J1 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.56□□□□□ -2.66
UPF3AQ9H1J1 MIR379-201ENST00000362218 67 ntBASIC-1.57□□□□□ -2.66
UPF3AQ9H1J1 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.57□□□□□ -2.66
UPF3AQ9H1J1 MIR664B-201ENST00000626756 61 ntBASIC-1.58□□□□□ -2.66
UPF3AQ9H1J1 RNU6-912P-201ENST00000363800 104 ntBASIC-1.59□□□□□ -2.66
UPF3AQ9H1J1 RNU6-614P-201ENST00000384369 107 ntBASIC-1.6□□□□□ -2.67
UPF3AQ9H1J1 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.6□□□□□ -2.67
UPF3AQ9H1J1 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.6□□□□□ -2.67
UPF3AQ9H1J1 U6.59-201ENST00000615686 107 ntBASIC-1.6□□□□□ -2.67
UPF3AQ9H1J1 RNU6-838P-201ENST00000363399 108 ntBASIC-1.61□□□□□ -2.67
UPF3AQ9H1J1 RNU6-753P-201ENST00000363926 107 ntBASIC-1.61□□□□□ -2.67
UPF3AQ9H1J1 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.61□□□□□ -2.67
UPF3AQ9H1J1 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.62□□□□□ -2.67
UPF3AQ9H1J1 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.62□□□□□ -2.67
UPF3AQ9H1J1 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.62□□□□□ -2.67
UPF3AQ9H1J1 RNU4-88P-201ENST00000411220 86 ntBASIC-1.64□□□□□ -2.67
UPF3AQ9H1J1 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.66□□□□□ -2.68
UPF3AQ9H1J1 MIR4317-201ENST00000637586 65 ntBASIC-1.66□□□□□ -2.68
UPF3AQ9H1J1 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.67□□□□□ -2.68
UPF3AQ9H1J1 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.67□□□□□ -2.68
UPF3AQ9H1J1 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.67□□□□□ -2.68
UPF3AQ9H1J1 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.68□□□□□ -2.68
UPF3AQ9H1J1 RNU6-118P-201ENST00000516552 102 ntBASIC-1.68□□□□□ -2.68
UPF3AQ9H1J1 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.69□□□□□ -2.68
UPF3AQ9H1J1 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.69□□□□□ -2.68
UPF3AQ9H1J1 SNORD113-3-201ENST00000364830 72 ntBASIC-1.69□□□□□ -2.68
UPF3AQ9H1J1 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.69□□□□□ -2.68
UPF3AQ9H1J1 MTND4LP19-201ENST00000403051 166 ntBASIC-1.69□□□□□ -2.68
UPF3AQ9H1J1 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.7□□□□□ -2.68
UPF3AQ9H1J1 RNA5SP405-201ENST00000363059 114 ntBASIC-1.71□□□□□ -2.68
UPF3AQ9H1J1 RNU6-808P-201ENST00000391233 108 ntBASIC-1.71□□□□□ -2.68
UPF3AQ9H1J1 MIR548F3-201ENST00000408509 87 ntBASIC-1.71□□□□□ -2.68
UPF3AQ9H1J1 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.71□□□□□ -2.68
UPF3AQ9H1J1 RNU6-986P-201ENST00000363133 102 ntBASIC-1.72□□□□□ -2.68
UPF3AQ9H1J1 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.72□□□□□ -2.68
UPF3AQ9H1J1 RNU6-930P-201ENST00000390938 100 ntBASIC-1.72□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 238.8 ms