Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL451105.1-201ENST00000450005 189 ntBASIC-1.7□□□□□ -2.68
NKX3-1Q99801 RNU6-446P-201ENST00000362827 106 ntBASIC-1.71□□□□□ -2.68
NKX3-1Q99801 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.71□□□□□ -2.68
NKX3-1Q99801 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.72□□□□□ -2.68
NKX3-1Q99801 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.72□□□□□ -2.68
NKX3-1Q99801 RNU6-419P-201ENST00000517030 63 ntBASIC-1.72□□□□□ -2.68
NKX3-1Q99801 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.73□□□□□ -2.69
NKX3-1Q99801 SNORD114-3-201ENST00000364969 75 ntBASIC-1.73□□□□□ -2.69
NKX3-1Q99801 MIR581-201ENST00000384895 96 ntBASIC-1.73□□□□□ -2.69
NKX3-1Q99801 RNA5SP86-201ENST00000390869 98 ntBASIC-1.74□□□□□ -2.69
NKX3-1Q99801 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.75□□□□□ -2.69
NKX3-1Q99801 SNORD45.2-201ENST00000363552 72 ntBASIC-1.75□□□□□ -2.69
NKX3-1Q99801 RNU6-361P-201ENST00000364454 107 ntBASIC-1.75□□□□□ -2.69
NKX3-1Q99801 MIR3123-201ENST00000583417 75 ntBASIC-1.75□□□□□ -2.69
NKX3-1Q99801 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.76□□□□□ -2.69
NKX3-1Q99801 SNORD60-201ENST00000383903 83 ntBASIC-1.76□□□□□ -2.69
NKX3-1Q99801 SNORA17.4-201ENST00000391287 132 ntBASIC-1.76□□□□□ -2.69
NKX3-1Q99801 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.77□□□□□ -2.69
NKX3-1Q99801 MIR548H1-201ENST00000408610 102 ntBASIC-1.77□□□□□ -2.69
NKX3-1Q99801 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.78□□□□□ -2.69
NKX3-1Q99801 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.78□□□□□ -2.69
NKX3-1Q99801 MIR548N-201ENST00000408742 75 ntBASIC-1.78□□□□□ -2.69
NKX3-1Q99801 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.79□□□□□ -2.7
NKX3-1Q99801 MIR487B-201ENST00000385021 84 ntBASIC-1.79□□□□□ -2.7
NKX3-1Q99801 MIR1207-201ENST00000408249 87 ntBASIC-1.79□□□□□ -2.7
NKX3-1Q99801 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.8□□□□□ -2.7
NKX3-1Q99801 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.8□□□□□ -2.7
NKX3-1Q99801 SNORD18C-201ENST00000362704 69 ntBASIC-1.81□□□□□ -2.7
NKX3-1Q99801 MIR633-201ENST00000384821 98 ntBASIC-1.81□□□□□ -2.7
NKX3-1Q99801 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.81□□□□□ -2.7
NKX3-1Q99801 MIR4426-201ENST00000640330 63 ntBASIC-1.81□□□□□ -2.7
NKX3-1Q99801 SNORD113-4-201ENST00000364802 75 ntBASIC-1.82□□□□□ -2.7
NKX3-1Q99801 RNU6-590P-201ENST00000365039 107 ntBASIC-1.82□□□□□ -2.7
NKX3-1Q99801 MIR548X-201ENST00000580069 75 ntBASIC-1.82□□□□□ -2.7
NKX3-1Q99801 RNY4P27-201ENST00000363341 96 ntBASIC-1.83□□□□□ -2.7
NKX3-1Q99801 AC125388.1-201ENST00000459631 156 ntBASIC-1.83□□□□□ -2.7
NKX3-1Q99801 RNU6-983P-201ENST00000516004 103 ntBASIC-1.83□□□□□ -2.7
NKX3-1Q99801 RNU6-829P-201ENST00000363700 112 ntBASIC-1.84□□□□□ -2.7
NKX3-1Q99801 RNU6-742P-201ENST00000365289 107 ntBASIC-1.85□□□□□ -2.71
NKX3-1Q99801 RNU6-841P-201ENST00000383872 107 ntBASIC-1.86□□□□□ -2.71
NKX3-1Q99801 MIR548AM-201ENST00000584298 74 ntBASIC-1.88□□□□□ -2.71
NKX3-1Q99801 RNU6-300P-201ENST00000459080 104 ntBASIC-1.9□□□□□ -2.71
NKX3-1Q99801 SNORD18.1-201ENST00000363807 70 ntBASIC-1.92□□□□□ -2.72
NKX3-1Q99801 snoU13.10-201ENST00000459301 103 ntBASIC-1.92□□□□□ -2.72
NKX3-1Q99801 MIR548W-201ENST00000581970 74 ntBASIC-1.93□□□□□ -2.72
NKX3-1Q99801 AC139453.2-201ENST00000487255 133 ntBASIC-1.95□□□□□ -2.72
NKX3-1Q99801 RNU6-68P-201ENST00000516576 104 ntBASIC-1.95□□□□□ -2.72
NKX3-1Q99801 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.95□□□□□ -2.72
NKX3-1Q99801 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.95□□□□□ -2.72
NKX3-1Q99801 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.96□□□□□ -2.72
NKX3-1Q99801 AC079150.2-201ENST00000443733 78 ntBASIC-1.97□□□□□ -2.72
NKX3-1Q99801 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.97□□□□□ -2.72
NKX3-1Q99801 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.98□□□□□ -2.73
NKX3-1Q99801 RNU6-176P-201ENST00000517196 105 ntBASIC-1.98□□□□□ -2.73
NKX3-1Q99801 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.99□□□□□ -2.73
NKX3-1Q99801 RNU4-33P-201ENST00000364316 85 ntBASIC-2□□□□□ -2.73
NKX3-1Q99801 RNU4-88P-201ENST00000411220 86 ntBASIC-2□□□□□ -2.73
NKX3-1Q99801 AC108019.1-201ENST00000512540 175 ntBASIC-2□□□□□ -2.73
NKX3-1Q99801 RNU6-980P-201ENST00000516925 103 ntBASIC-2□□□□□ -2.73
NKX3-1Q99801 RNU6-912P-201ENST00000363800 104 ntBASIC-2.02□□□□□ -2.73
NKX3-1Q99801 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.02□□□□□ -2.73
NKX3-1Q99801 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.02□□□□□ -2.73
NKX3-1Q99801 MIR379-201ENST00000362218 67 ntBASIC-2.03□□□□□ -2.73
NKX3-1Q99801 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.03□□□□□ -2.73
NKX3-1Q99801 RNU6-499P-201ENST00000365615 107 ntBASIC-2.04□□□□□ -2.74
NKX3-1Q99801 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.05□□□□□ -2.74
NKX3-1Q99801 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.05□□□□□ -2.74
NKX3-1Q99801 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.05□□□□□ -2.74
NKX3-1Q99801 RNU6-119P-201ENST00000364882 107 ntBASIC-2.06□□□□□ -2.74
NKX3-1Q99801 MIR4756-201ENST00000577874 78 ntBASIC-2.06□□□□□ -2.74
NKX3-1Q99801 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.07□□□□□ -2.74
NKX3-1Q99801 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.07□□□□□ -2.74
NKX3-1Q99801 MIR496-201ENST00000385226 102 ntBASIC-2.08□□□□□ -2.74
NKX3-1Q99801 MIR664B-201ENST00000626756 61 ntBASIC-2.1□□□□□ -2.75
NKX3-1Q99801 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.11□□□□□ -2.75
NKX3-1Q99801 RNU6-118P-201ENST00000516552 102 ntBASIC-2.12□□□□□ -2.75
NKX3-1Q99801 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.13□□□□□ -2.75
NKX3-1Q99801 AC097484.2-201ENST00000509147 251 ntBASIC-2.14□□□□□ -2.75
NKX3-1Q99801 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.14□□□□□ -2.75
NKX3-1Q99801 MIR548AL-201ENST00000578416 97 ntBASIC-2.14□□□□□ -2.75
NKX3-1Q99801 SNORD113-3-201ENST00000364830 72 ntBASIC-2.17□□□□□ -2.76
NKX3-1Q99801 MIR4317-201ENST00000637586 65 ntBASIC-2.17□□□□□ -2.76
NKX3-1Q99801 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.18□□□□□ -2.76
NKX3-1Q99801 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.18□□□□□ -2.76
NKX3-1Q99801 MIR548H4-201ENST00000408689 111 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.19□□□□□ -2.76
NKX3-1Q99801 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.19□□□□□ -2.76
NKX3-1Q99801 RNU6-788P-201ENST00000390967 104 ntBASIC-2.21□□□□□ -2.76
NKX3-1Q99801 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.22□□□□□ -2.76
NKX3-1Q99801 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.23□□□□□ -2.77
NKX3-1Q99801 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.23□□□□□ -2.77
NKX3-1Q99801 RNU6-936P-201ENST00000384005 107 ntBASIC-2.23□□□□□ -2.77
NKX3-1Q99801 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.23□□□□□ -2.77
NKX3-1Q99801 MIR1254-1-201ENST00000408257 97 ntBASIC-2.23□□□□□ -2.77
NKX3-1Q99801 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.24□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 221.5 ms