Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SNORD115.2-201ENST00000391126 59 ntBASIC-0.6□□□□□ -2.51
HOXD9P28356 MIR409-201ENST00000362237 79 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 RNU6-912P-201ENST00000363800 104 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 RNU6-10P-201ENST00000384036 107 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 MIR487B-201ENST00000385021 84 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 MIR23C-201ENST00000579846 100 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 MIR4317-201ENST00000637586 65 ntBASIC-0.61□□□□□ -2.51
HOXD9P28356 RNU6-838P-201ENST00000363399 108 ntBASIC-0.62□□□□□ -2.51
HOXD9P28356 MIR548N-201ENST00000408742 75 ntBASIC-0.62□□□□□ -2.51
HOXD9P28356 snoU13.19-201ENST00000459148 104 ntBASIC-0.62□□□□□ -2.51
HOXD9P28356 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.62□□□□□ -2.51
HOXD9P28356 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.63□□□□□ -2.51
HOXD9P28356 HLA-S-202ENST00000425174 53 ntBASIC-0.63□□□□□ -2.51
HOXD9P28356 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.63□□□□□ -2.51
HOXD9P28356 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.63□□□□□ -2.51
HOXD9P28356 MIR1254-1-201ENST00000408257 97 ntBASIC-0.64□□□□□ -2.51
HOXD9P28356 MIR548F3-201ENST00000408509 87 ntBASIC-0.64□□□□□ -2.51
HOXD9P28356 MIR3115-201ENST00000577915 68 ntBASIC-0.64□□□□□ -2.51
HOXD9P28356 MIR3165-201ENST00000579874 75 ntBASIC-0.64□□□□□ -2.51
HOXD9P28356 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.64□□□□□ -2.51
HOXD9P28356 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.65□□□□□ -2.51
HOXD9P28356 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.65□□□□□ -2.51
HOXD9P28356 MIR548H4-201ENST00000408689 111 ntBASIC-0.65□□□□□ -2.51
HOXD9P28356 snoU13.10-201ENST00000459301 103 ntBASIC-0.65□□□□□ -2.51
HOXD9P28356 MIR5591-201ENST00000578248 65 ntBASIC-0.65□□□□□ -2.51
HOXD9P28356 SNORD18C-201ENST00000362704 69 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-822P-201ENST00000362707 106 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-400P-201ENST00000391173 106 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-706P-201ENST00000517229 104 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 MIR4306-201ENST00000583390 91 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 MIR3123-201ENST00000583417 75 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 DLEU2_4.2-201ENST00000616613 58 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.66□□□□□ -2.52
HOXD9P28356 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.67□□□□□ -2.52
HOXD9P28356 RNA5SP461-201ENST00000516451 104 ntBASIC-0.67□□□□□ -2.52
HOXD9P28356 RNU6-68P-201ENST00000516576 104 ntBASIC-0.67□□□□□ -2.52
HOXD9P28356 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.67□□□□□ -2.52
HOXD9P28356 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.68□□□□□ -2.52
HOXD9P28356 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.68□□□□□ -2.52
HOXD9P28356 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.68□□□□□ -2.52
HOXD9P28356 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.68□□□□□ -2.52
HOXD9P28356 MIR548H1-201ENST00000408610 102 ntBASIC-0.69□□□□□ -2.52
HOXD9P28356 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.69□□□□□ -2.52
HOXD9P28356 MIR6502-201ENST00000617296 76 ntBASIC-0.69□□□□□ -2.52
HOXD9P28356 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.7□□□□□ -2.52
HOXD9P28356 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.71□□□□□ -2.52
HOXD9P28356 MIR548W-201ENST00000581970 74 ntBASIC-0.71□□□□□ -2.52
HOXD9P28356 RNU6-176P-201ENST00000517196 105 ntBASIC-0.72□□□□□ -2.52
HOXD9P28356 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.73□□□□□ -2.53
HOXD9P28356 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.73□□□□□ -2.53
HOXD9P28356 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.73□□□□□ -2.53
HOXD9P28356 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.73□□□□□ -2.53
HOXD9P28356 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.74□□□□□ -2.53
HOXD9P28356 SNORD113-3-201ENST00000364830 72 ntBASIC-0.74□□□□□ -2.53
HOXD9P28356 RNA5SP331-201ENST00000364986 107 ntBASIC-0.74□□□□□ -2.53
HOXD9P28356 RNA5SP86-201ENST00000390869 98 ntBASIC-0.74□□□□□ -2.53
HOXD9P28356 RNA5SP266-201ENST00000410273 108 ntBASIC-0.74□□□□□ -2.53
HOXD9P28356 MIR587-201ENST00000384845 96 ntBASIC-0.75□□□□□ -2.53
HOXD9P28356 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.75□□□□□ -2.53
HOXD9P28356 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.76□□□□□ -2.53
HOXD9P28356 RNA5SP67-201ENST00000516422 131 ntBASIC-0.76□□□□□ -2.53
HOXD9P28356 MIR4756-201ENST00000577874 78 ntBASIC-0.76□□□□□ -2.53
HOXD9P28356 MIR548AM-201ENST00000584298 74 ntBASIC-0.76□□□□□ -2.53
HOXD9P28356 FTX_4.1-201ENST00000616291 147 ntBASIC-0.76□□□□□ -2.53
HOXD9P28356 MIR379-201ENST00000362218 67 ntBASIC-0.77□□□□□ -2.53
HOXD9P28356 RNU6-59P-201ENST00000384787 107 ntBASIC-0.77□□□□□ -2.53
HOXD9P28356 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.77□□□□□ -2.53
HOXD9P28356 MIR1246-201ENST00000636535 73 ntBASIC-0.77□□□□□ -2.53
HOXD9P28356 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.78□□□□□ -2.53
HOXD9P28356 SNORD18.1-201ENST00000363807 70 ntBASIC-0.79□□□□□ -2.54
HOXD9P28356 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.79□□□□□ -2.54
HOXD9P28356 RNU6-841P-201ENST00000383872 107 ntBASIC-0.8□□□□□ -2.54
HOXD9P28356 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.8□□□□□ -2.54
HOXD9P28356 AC108019.1-201ENST00000512540 175 ntBASIC-0.81□□□□□ -2.54
HOXD9P28356 MIR4770-201ENST00000579149 58 ntBASIC-0.81□□□□□ -2.54
HOXD9P28356 AL627230.5-201ENST00000619807 58 ntBASIC-0.81□□□□□ -2.54
HOXD9P28356 MIR198-201ENST00000637333 62 ntBASIC-0.81□□□□□ -2.54
HOXD9P28356 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.82□□□□□ -2.54
HOXD9P28356 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.82□□□□□ -2.54
HOXD9P28356 AC138207.3-201ENST00000585289 166 ntBASIC-0.82□□□□□ -2.54
HOXD9P28356 RNU6-836P-201ENST00000362920 107 ntBASIC-0.83□□□□□ -2.54
HOXD9P28356 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.83□□□□□ -2.54
HOXD9P28356 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.83□□□□□ -2.54
HOXD9P28356 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.83□□□□□ -2.54
HOXD9P28356 SNORD45C-201ENST00000383893 79 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.84□□□□□ -2.54
HOXD9P28356 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.85□□□□□ -2.55
HOXD9P28356 RNU6-724P-201ENST00000390958 105 ntBASIC-0.85□□□□□ -2.55
HOXD9P28356 MIR1285-2-201ENST00000408311 88 ntBASIC-0.85□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms