Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MIR581-201ENST00000384895 96 ntBASIC0.58□□□□□ -2.32
CCDC61Q9Y6R9 AP000533.3-201ENST00000447704 118 ntBASIC0.55□□□□□ -2.32
CCDC61Q9Y6R9 RNA5SP214-201ENST00000363378 118 ntBASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 AC120024.2-201ENST00000576526 175 ntBASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 MIR3179-1-201ENST00000578940 84 ntBASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 MIR3179-2-201ENST00000579107 84 ntBASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 MIR3179-3-201ENST00000579566 84 ntBASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 MIR3179-4-201ENST00000617599 84 ntBASIC0.53□□□□□ -2.32
CCDC61Q9Y6R9 MIR204-201ENST00000385200 110 ntBASIC0.52□□□□□ -2.33
CCDC61Q9Y6R9 SNORA13-201ENST00000458790 133 ntBASIC0.52□□□□□ -2.33
CCDC61Q9Y6R9 RNU6-68P-201ENST00000516576 104 ntBASIC0.52□□□□□ -2.33
CCDC61Q9Y6R9 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.52□□□□□ -2.33
CCDC61Q9Y6R9 SNORA50A-201ENST00000384225 134 ntBASIC0.51□□□□□ -2.33
CCDC61Q9Y6R9 SNORD18C-201ENST00000362704 69 ntBASIC0.5□□□□□ -2.33
CCDC61Q9Y6R9 HAR1A.1-201ENST00000459583 118 ntBASIC0.5□□□□□ -2.33
CCDC61Q9Y6R9 RNA5SP476-201ENST00000516613 103 ntBASIC0.5□□□□□ -2.33
CCDC61Q9Y6R9 MIR4263-201ENST00000584745 83 ntBASIC0.5□□□□□ -2.33
CCDC61Q9Y6R9 SNORA62.5-201ENST00000516634 120 ntBASIC0.49□□□□□ -2.33
CCDC61Q9Y6R9 MIR2909-201ENST00000617113 69 ntBASIC0.49□□□□□ -2.33
CCDC61Q9Y6R9 SNORD114-5-201ENST00000362928 70 ntBASIC0.48□□□□□ -2.33
CCDC61Q9Y6R9 AC090616.4-201ENST00000448026 115 ntBASIC0.48□□□□□ -2.33
CCDC61Q9Y6R9 MIR6086-201ENST00000638065 55 ntBASIC0.48□□□□□ -2.33
CCDC61Q9Y6R9 Y_RNA.189-201ENST00000363959 112 ntBASIC0.47□□□□□ -2.33
CCDC61Q9Y6R9 SNORA32.1-201ENST00000364514 115 ntBASIC0.46□□□□□ -2.34
CCDC61Q9Y6R9 Y_RNA.260-201ENST00000364628 101 ntBASIC0.46□□□□□ -2.34
CCDC61Q9Y6R9 RNU6-929P-201ENST00000384429 107 ntBASIC0.46□□□□□ -2.34
CCDC61Q9Y6R9 AL590491.3-201ENST00000610731 82 ntBASIC0.46□□□□□ -2.34
CCDC61Q9Y6R9 Y_RNA.781-201ENST00000620301 103 ntBASIC0.46□□□□□ -2.34
CCDC61Q9Y6R9 RNU6-563P-201ENST00000364872 108 ntBASIC0.45□□□□□ -2.34
CCDC61Q9Y6R9 RNU6-30P-201ENST00000384561 107 ntBASIC0.45□□□□□ -2.34
CCDC61Q9Y6R9 MIR4514-201ENST00000581410 57 ntBASIC0.45□□□□□ -2.34
CCDC61Q9Y6R9 AC023932.2-201ENST00000603176 175 ntBASIC0.44□□□□□ -2.34
CCDC61Q9Y6R9 SNORD114-9-201ENST00000364370 72 ntBASIC0.43□□□□□ -2.34
CCDC61Q9Y6R9 RNA5SP224-201ENST00000365069 126 ntBASIC0.43□□□□□ -2.34
CCDC61Q9Y6R9 RNU6-695P-201ENST00000391157 104 ntBASIC0.43□□□□□ -2.34
CCDC61Q9Y6R9 RNA5SP134-201ENST00000516492 96 ntBASIC0.43□□□□□ -2.34
CCDC61Q9Y6R9 AC104692.1-201ENST00000472406 90 ntBASIC0.42□□□□□ -2.34
CCDC61Q9Y6R9 MIR548AJ2-201ENST00000408539 92 ntBASIC0.41□□□□□ -2.34
CCDC61Q9Y6R9 RNA5SP285-201ENST00000516619 119 ntBASIC0.41□□□□□ -2.34
CCDC61Q9Y6R9 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.39□□□□□ -2.35
CCDC61Q9Y6R9 Y_RNA.335-201ENST00000365299 96 ntBASIC0.38□□□□□ -2.35
CCDC61Q9Y6R9 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
CCDC61Q9Y6R9 snoU13.19-201ENST00000459148 104 ntBASIC0.38□□□□□ -2.35
CCDC61Q9Y6R9 MIR4645-201ENST00000583158 77 ntBASIC0.37□□□□□ -2.35
CCDC61Q9Y6R9 MIR6718-201ENST00000616153 80 ntBASIC0.37□□□□□ -2.35
CCDC61Q9Y6R9 AL627230.5-201ENST00000619807 58 ntBASIC0.36□□□□□ -2.35
CCDC61Q9Y6R9 Y_RNA.185-201ENST00000363894 100 ntBASIC0.35□□□□□ -2.35
CCDC61Q9Y6R9 Y_RNA.406-201ENST00000383984 100 ntBASIC0.35□□□□□ -2.35
CCDC61Q9Y6R9 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.35□□□□□ -2.35
CCDC61Q9Y6R9 SNORD114-12-201ENST00000365400 75 ntBASIC0.34□□□□□ -2.36
CCDC61Q9Y6R9 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC61Q9Y6R9 FTX_4.1-201ENST00000616291 147 ntBASIC0.33□□□□□ -2.36
CCDC61Q9Y6R9 RNA5SP26-201ENST00000362406 119 ntBASIC0.32□□□□□ -2.36
CCDC61Q9Y6R9 MIR548T-201ENST00000408369 74 ntBASIC0.31□□□□□ -2.36
CCDC61Q9Y6R9 SNORD45C-201ENST00000383893 79 ntBASIC0.3□□□□□ -2.36
CCDC61Q9Y6R9 RNA5SP368-201ENST00000364298 116 ntBASIC0.29□□□□□ -2.36
CCDC61Q9Y6R9 SNORA18.1-201ENST00000363418 128 ntBASIC0.28□□□□□ -2.36
CCDC61Q9Y6R9 RNU6-912P-201ENST00000363800 104 ntBASIC0.28□□□□□ -2.36
CCDC61Q9Y6R9 AC018880.2-201ENST00000414265 201 ntBASIC0.28□□□□□ -2.36
CCDC61Q9Y6R9 MIR3666-201ENST00000607845 111 ntBASIC0.28□□□□□ -2.36
CCDC61Q9Y6R9 RNU6-1169P-201ENST00000363537 103 ntBASIC0.27□□□□□ -2.37
CCDC61Q9Y6R9 MIR5589-201ENST00000579442 60 ntBASIC0.27□□□□□ -2.37
CCDC61Q9Y6R9 MIR4636-201ENST00000582271 80 ntBASIC0.27□□□□□ -2.37
CCDC61Q9Y6R9 MIR6759-201ENST00000638110 65 ntBASIC0.27□□□□□ -2.37
CCDC61Q9Y6R9 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.26□□□□□ -2.37
CCDC61Q9Y6R9 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.26□□□□□ -2.37
CCDC61Q9Y6R9 MIR371B-201ENST00000638082 66 ntBASIC0.25□□□□□ -2.37
CCDC61Q9Y6R9 MIR4788-201ENST00000639104 80 ntBASIC0.25□□□□□ -2.37
CCDC61Q9Y6R9 MIR1295B-201ENST00000636144 60 ntBASIC0.24□□□□□ -2.37
CCDC61Q9Y6R9 Z95118.1-201ENST00000421372 247 ntBASIC0.23□□□□□ -2.37
CCDC61Q9Y6R9 AC021146.6-201ENST00000514659 117 ntBASIC0.23□□□□□ -2.37
CCDC61Q9Y6R9 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
CCDC61Q9Y6R9 RNU6-758P-201ENST00000516292 89 ntBASIC0.21□□□□□ -2.38
CCDC61Q9Y6R9 MIR4802-201ENST00000581881 80 ntBASIC0.21□□□□□ -2.38
CCDC61Q9Y6R9 MIR1295A-201ENST00000408463 79 ntBASIC0.2□□□□□ -2.38
CCDC61Q9Y6R9 MIR4290-201ENST00000583807 95 ntBASIC0.2□□□□□ -2.38
CCDC61Q9Y6R9 SNORD114-11-201ENST00000363738 75 ntBASIC0.19□□□□□ -2.38
CCDC61Q9Y6R9 MIR5190-201ENST00000581537 80 ntBASIC0.19□□□□□ -2.38
CCDC61Q9Y6R9 MIR4768-201ENST00000585270 74 ntBASIC0.19□□□□□ -2.38
CCDC61Q9Y6R9 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC0.19□□□□□ -2.38
CCDC61Q9Y6R9 SNORD114-31-201ENST00000363219 75 ntBASIC0.18□□□□□ -2.38
CCDC61Q9Y6R9 SNORD114-15-201ENST00000364687 72 ntBASIC0.18□□□□□ -2.38
CCDC61Q9Y6R9 IGLVI-20-201ENST00000519296 130 ntBASIC0.17□□□□□ -2.38
CCDC61Q9Y6R9 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC0.16□□□□□ -2.38
CCDC61Q9Y6R9 Y_RNA.484-201ENST00000384389 103 ntBASIC0.15□□□□□ -2.39
CCDC61Q9Y6R9 RNA5SP331-201ENST00000364986 107 ntBASIC0.13□□□□□ -2.39
CCDC61Q9Y6R9 RNA5SP300-201ENST00000391197 107 ntBASIC0.13□□□□□ -2.39
CCDC61Q9Y6R9 RNA5SP25-201ENST00000410815 110 ntBASIC0.13□□□□□ -2.39
CCDC61Q9Y6R9 RNA5SP266-201ENST00000410273 108 ntBASIC0.12□□□□□ -2.39
CCDC61Q9Y6R9 SNORD4A-201ENST00000459174 72 ntBASIC0.12□□□□□ -2.39
CCDC61Q9Y6R9 MIR604-201ENST00000384880 94 ntBASIC0.11□□□□□ -2.39
CCDC61Q9Y6R9 MIR656-201ENST00000385224 78 ntBASIC0.11□□□□□ -2.39
CCDC61Q9Y6R9 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
CCDC61Q9Y6R9 MIR3681-201ENST00000580089 72 ntBASIC0.1□□□□□ -2.39
CCDC61Q9Y6R9 Y_RNA.457-201ENST00000384237 111 ntBASIC0.09□□□□□ -2.4
CCDC61Q9Y6R9 RNU6-79P-201ENST00000362511 107 ntBASIC0.08□□□□□ -2.4
CCDC61Q9Y6R9 SNORD114-16-201ENST00000363044 70 ntBASIC0.08□□□□□ -2.4
CCDC61Q9Y6R9 RNU6-345P-201ENST00000517001 107 ntBASIC0.08□□□□□ -2.4
CCDC61Q9Y6R9 AP001180.6-201ENST00000584918 159 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms