Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.35□□□□□ -2.63
FOXA2Q9Y261 RNU6-118P-201ENST00000516552 102 ntBASIC-1.35□□□□□ -2.63
FOXA2Q9Y261 RNA5SP331-201ENST00000364986 107 ntBASIC-1.36□□□□□ -2.63
FOXA2Q9Y261 RNU6-294P-201ENST00000364999 102 ntBASIC-1.36□□□□□ -2.63
FOXA2Q9Y261 RNU6-841P-201ENST00000383872 107 ntBASIC-1.36□□□□□ -2.63
FOXA2Q9Y261 SNORD116-24-201ENST00000384549 92 ntBASIC-1.36□□□□□ -2.63
FOXA2Q9Y261 MIR601-201ENST00000385256 79 ntBASIC-1.36□□□□□ -2.63
FOXA2Q9Y261 SNX3P1X-201ENST00000414887 175 ntBASIC-1.36□□□□□ -2.63
FOXA2Q9Y261 RNA5SP405-201ENST00000363059 114 ntBASIC-1.37□□□□□ -2.63
FOXA2Q9Y261 MIR4666B-201ENST00000578142 81 ntBASIC-1.37□□□□□ -2.63
FOXA2Q9Y261 MIR3139-201ENST00000579145 76 ntBASIC-1.37□□□□□ -2.63
FOXA2Q9Y261 MIR548W-201ENST00000581970 74 ntBASIC-1.37□□□□□ -2.63
FOXA2Q9Y261 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.38□□□□□ -2.63
FOXA2Q9Y261 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.38□□□□□ -2.63
FOXA2Q9Y261 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.38□□□□□ -2.63
FOXA2Q9Y261 AC013734.1-201ENST00000619329 111 ntBASIC-1.38□□□□□ -2.63
FOXA2Q9Y261 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.38□□□□□ -2.63
FOXA2Q9Y261 MIR3134-201ENST00000579433 74 ntBASIC-1.39□□□□□ -2.63
FOXA2Q9Y261 MIR3170-201ENST00000582699 77 ntBASIC-1.39□□□□□ -2.63
FOXA2Q9Y261 AL627230.5-201ENST00000619807 58 ntBASIC-1.39□□□□□ -2.63
FOXA2Q9Y261 SNORD1B-201ENST00000363091 84 ntBASIC-1.4□□□□□ -2.63
FOXA2Q9Y261 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.4□□□□□ -2.63
FOXA2Q9Y261 AC005520.4-201ENST00000604337 90 ntBASIC-1.4□□□□□ -2.63
FOXA2Q9Y261 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.4□□□□□ -2.63
FOXA2Q9Y261 MIR23C-201ENST00000579846 100 ntBASIC-1.41□□□□□ -2.64
FOXA2Q9Y261 U4.2-201ENST00000618561 85 ntBASIC-1.41□□□□□ -2.64
FOXA2Q9Y261 RNU6-820P-201ENST00000384273 107 ntBASIC-1.42□□□□□ -2.64
FOXA2Q9Y261 snoU13.10-201ENST00000459301 103 ntBASIC-1.42□□□□□ -2.64
FOXA2Q9Y261 RNU6-687P-201ENST00000516443 89 ntBASIC-1.42□□□□□ -2.64
FOXA2Q9Y261 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.42□□□□□ -2.64
FOXA2Q9Y261 MIR5582-201ENST00000579697 68 ntBASIC-1.42□□□□□ -2.64
FOXA2Q9Y261 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.42□□□□□ -2.64
FOXA2Q9Y261 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.43□□□□□ -2.64
FOXA2Q9Y261 RNU6-787P-201ENST00000384032 107 ntBASIC-1.43□□□□□ -2.64
FOXA2Q9Y261 MIR496-201ENST00000385226 102 ntBASIC-1.43□□□□□ -2.64
FOXA2Q9Y261 MIR198-201ENST00000637333 62 ntBASIC-1.43□□□□□ -2.64
FOXA2Q9Y261 RNU6-247P-201ENST00000362636 107 ntBASIC-1.44□□□□□ -2.64
FOXA2Q9Y261 RNY4P27-201ENST00000363341 96 ntBASIC-1.44□□□□□ -2.64
FOXA2Q9Y261 RNU6-995P-201ENST00000391244 107 ntBASIC-1.44□□□□□ -2.64
FOXA2Q9Y261 RNU6-542P-201ENST00000516405 103 ntBASIC-1.44□□□□□ -2.64
FOXA2Q9Y261 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.44□□□□□ -2.64
FOXA2Q9Y261 RNU6-194P-201ENST00000363862 105 ntBASIC-1.45□□□□□ -2.64
FOXA2Q9Y261 MT-TM-201ENST00000387377 68 ntBASIC-1.45□□□□□ -2.64
FOXA2Q9Y261 RNU7-151P-201ENST00000516930 53 ntBASIC-1.45□□□□□ -2.64
FOXA2Q9Y261 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.45□□□□□ -2.64
FOXA2Q9Y261 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.45□□□□□ -2.64
FOXA2Q9Y261 RNU6-411P-201ENST00000384451 107 ntBASIC-1.46□□□□□ -2.64
FOXA2Q9Y261 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.46□□□□□ -2.64
FOXA2Q9Y261 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.46□□□□□ -2.64
FOXA2Q9Y261 RNU6-172P-201ENST00000411000 93 ntBASIC-1.47□□□□□ -2.64
FOXA2Q9Y261 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.47□□□□□ -2.64
FOXA2Q9Y261 U7.4-201ENST00000614961 63 ntBASIC-1.47□□□□□ -2.64
FOXA2Q9Y261 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.48□□□□□ -2.65
FOXA2Q9Y261 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.48□□□□□ -2.65
FOXA2Q9Y261 MIR581-201ENST00000384895 96 ntBASIC-1.48□□□□□ -2.65
FOXA2Q9Y261 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.48□□□□□ -2.65
FOXA2Q9Y261 RNU6-92P-201ENST00000605893 104 ntBASIC-1.48□□□□□ -2.65
FOXA2Q9Y261 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.48□□□□□ -2.65
FOXA2Q9Y261 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 MIR579-201ENST00000385221 98 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 MIR4748-201ENST00000578076 82 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 AC062037.1-201ENST00000605302 128 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 U6.97-201ENST00000636904 101 ntBASIC-1.49□□□□□ -2.65
FOXA2Q9Y261 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.5□□□□□ -2.65
FOXA2Q9Y261 RNU6-974P-201ENST00000384099 108 ntBASIC-1.5□□□□□ -2.65
FOXA2Q9Y261 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.5□□□□□ -2.65
FOXA2Q9Y261 MIR1468-201ENST00000410600 86 ntBASIC-1.5□□□□□ -2.65
FOXA2Q9Y261 RNY3P8-201ENST00000411366 126 ntBASIC-1.5□□□□□ -2.65
FOXA2Q9Y261 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.51□□□□□ -2.65
FOXA2Q9Y261 MIR7978-201ENST00000636158 59 ntBASIC-1.51□□□□□ -2.65
FOXA2Q9Y261 SNORA27.2-201ENST00000363365 126 ntBASIC-1.53□□□□□ -2.65
FOXA2Q9Y261 RNU6-669P-201ENST00000365575 107 ntBASIC-1.53□□□□□ -2.65
FOXA2Q9Y261 RNU6-634P-201ENST00000459134 106 ntBASIC-1.53□□□□□ -2.65
FOXA2Q9Y261 SNORD63.2-201ENST00000516303 64 ntBASIC-1.53□□□□□ -2.65
FOXA2Q9Y261 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.54□□□□□ -2.66
FOXA2Q9Y261 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.54□□□□□ -2.66
FOXA2Q9Y261 MIR125B1-201ENST00000385236 88 ntBASIC-1.54□□□□□ -2.66
FOXA2Q9Y261 SNORD60.1-201ENST00000362451 73 ntBASIC-1.55□□□□□ -2.66
FOXA2Q9Y261 SNORD114-3-201ENST00000364969 75 ntBASIC-1.55□□□□□ -2.66
FOXA2Q9Y261 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.56□□□□□ -2.66
FOXA2Q9Y261 RNU6-663P-201ENST00000391105 106 ntBASIC-1.56□□□□□ -2.66
FOXA2Q9Y261 MIR466-201ENST00000580653 84 ntBASIC-1.56□□□□□ -2.66
FOXA2Q9Y261 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.56□□□□□ -2.66
FOXA2Q9Y261 RNU6-141P-201ENST00000410499 105 ntBASIC-1.57□□□□□ -2.66
FOXA2Q9Y261 RNU7-160P-201ENST00000516660 62 ntBASIC-1.57□□□□□ -2.66
FOXA2Q9Y261 MIR3202-2-201ENST00000635980 79 ntBASIC-1.57□□□□□ -2.66
FOXA2Q9Y261 AC097484.2-201ENST00000509147 251 ntBASIC-1.58□□□□□ -2.66
FOXA2Q9Y261 RNU6-523P-201ENST00000516304 54 ntBASIC-1.58□□□□□ -2.66
FOXA2Q9Y261 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.58□□□□□ -2.66
FOXA2Q9Y261 MIR7110-201ENST00000612638 86 ntBASIC-1.58□□□□□ -2.66
FOXA2Q9Y261 FTX_4.1-201ENST00000616291 147 ntBASIC-1.58□□□□□ -2.66
FOXA2Q9Y261 SNORD113-3-201ENST00000364830 72 ntBASIC-1.59□□□□□ -2.66
FOXA2Q9Y261 RNA5SP170-201ENST00000517150 101 ntBASIC-1.59□□□□□ -2.66
FOXA2Q9Y261 SNORD73B-201ENST00000364394 72 ntBASIC-1.6□□□□□ -2.67
FOXA2Q9Y261 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.6□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 200.7 ms