Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNY1P1-201ENST00000364372 112 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 SNORD20-201ENST00000384550 80 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 MIR581-201ENST00000384895 96 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 IGLL4P-201ENST00000614590 133 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 U6.97-201ENST00000636904 101 ntBASIC-1.55□□□□□ -2.66
SHMT2P34897 MIR365A-201ENST00000362260 87 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 MIR154-201ENST00000385243 84 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 MIR1468-201ENST00000410600 86 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 MIR548W-201ENST00000581970 74 ntBASIC-1.56□□□□□ -2.66
SHMT2P34897 RNU4-88P-201ENST00000411220 86 ntBASIC-1.57□□□□□ -2.66
SHMT2P34897 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.57□□□□□ -2.66
SHMT2P34897 SNORD60.1-201ENST00000362451 73 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 RNU6-787P-201ENST00000384032 107 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 MIR4441-201ENST00000582623 100 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 RNU6-92P-201ENST00000605893 104 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 MIR664B-201ENST00000626756 61 ntBASIC-1.58□□□□□ -2.66
SHMT2P34897 RNA5SP89-201ENST00000410300 108 ntBASIC-1.59□□□□□ -2.66
SHMT2P34897 RNU6-542P-201ENST00000516405 103 ntBASIC-1.59□□□□□ -2.66
SHMT2P34897 RNU6-789P-201ENST00000517105 102 ntBASIC-1.59□□□□□ -2.66
SHMT2P34897 RNU6-895P-201ENST00000384125 103 ntBASIC-1.6□□□□□ -2.67
SHMT2P34897 snoU13.10-201ENST00000459301 103 ntBASIC-1.6□□□□□ -2.67
SHMT2P34897 RNU6-919P-201ENST00000516731 104 ntBASIC-1.6□□□□□ -2.67
SHMT2P34897 RNU6-44P-201ENST00000384045 107 ntBASIC-1.61□□□□□ -2.67
SHMT2P34897 RNU7-160P-201ENST00000516660 62 ntBASIC-1.61□□□□□ -2.67
SHMT2P34897 RNU6-810P-201ENST00000364001 107 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 RNU6-980P-201ENST00000516925 103 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 MIR4666B-201ENST00000578142 81 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 MIR198-201ENST00000637333 62 ntBASIC-1.62□□□□□ -2.67
SHMT2P34897 RNU6-231P-201ENST00000517122 103 ntBASIC-1.63□□□□□ -2.67
SHMT2P34897 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.63□□□□□ -2.67
SHMT2P34897 MIR494-201ENST00000349529 81 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 RNA5SP331-201ENST00000364986 107 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 RNU6-520P-201ENST00000384717 104 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 AL606753.1-201ENST00000427435 87 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 MIR7110-201ENST00000612638 86 ntBASIC-1.64□□□□□ -2.67
SHMT2P34897 MIR202-201ENST00000362219 110 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.65□□□□□ -2.67
SHMT2P34897 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.66□□□□□ -2.68
SHMT2P34897 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.66□□□□□ -2.68
SHMT2P34897 MIR548N-201ENST00000408742 75 ntBASIC-1.66□□□□□ -2.68
SHMT2P34897 SNORD18C-201ENST00000362704 69 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 RNU6-828P-201ENST00000364876 107 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 SNORA40.16-201ENST00000517238 121 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.67□□□□□ -2.68
SHMT2P34897 U4.2-201ENST00000618561 85 ntBASIC-1.67□□□□□ -2.68
SHMT2P34897 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.67□□□□□ -2.68
SHMT2P34897 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.68□□□□□ -2.68
SHMT2P34897 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.68□□□□□ -2.68
SHMT2P34897 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.68□□□□□ -2.68
SHMT2P34897 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNU6-153P-201ENST00000364422 104 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNU6-649P-201ENST00000384463 107 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 SNORD116.2-201ENST00000391251 93 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNY4P30-201ENST00000410216 95 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.69□□□□□ -2.68
SHMT2P34897 RNU6-361P-201ENST00000364454 107 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 RNU6-411P-201ENST00000384451 107 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 SNORA40B-201ENST00000385573 128 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 RNU6-634P-201ENST00000459134 106 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 RNU6-68P-201ENST00000516576 104 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 AL627230.5-201ENST00000619807 58 ntBASIC-1.7□□□□□ -2.68
SHMT2P34897 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.71□□□□□ -2.68
SHMT2P34897 MIR450A2-201ENST00000385022 100 ntBASIC-1.71□□□□□ -2.68
SHMT2P34897 RNU6-122P-201ENST00000516818 107 ntBASIC-1.71□□□□□ -2.68
SHMT2P34897 RNA5SP405-201ENST00000363059 114 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 SNORA17.4-201ENST00000391287 132 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.72□□□□□ -2.68
SHMT2P34897 SNORA25.5-201ENST00000363782 126 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 SNORD60-201ENST00000383903 83 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 RNU6-242P-201ENST00000384359 107 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 RNU6-663P-201ENST00000391105 106 ntBASIC-1.73□□□□□ -2.69
SHMT2P34897 RNU6-294P-201ENST00000364999 102 ntBASIC-1.74□□□□□ -2.69
SHMT2P34897 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.74□□□□□ -2.69
SHMT2P34897 RNU6-530P-201ENST00000391180 107 ntBASIC-1.75□□□□□ -2.69
SHMT2P34897 AC062037.1-201ENST00000605302 128 ntBASIC-1.75□□□□□ -2.69
SHMT2P34897 U7.4-201ENST00000614961 63 ntBASIC-1.75□□□□□ -2.69
SHMT2P34897 SNORD114-3-201ENST00000364969 75 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.76□□□□□ -2.69
SHMT2P34897 AC097484.2-201ENST00000509147 251 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 RNU6-118P-201ENST00000516552 102 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 MIR4748-201ENST00000578076 82 ntBASIC-1.76□□□□□ -2.69
SHMT2P34897 SNORA25.4-201ENST00000363666 124 ntBASIC-1.78□□□□□ -2.69
SHMT2P34897 SNORD113-3-201ENST00000364830 72 ntBASIC-1.78□□□□□ -2.69
SHMT2P34897 AL451105.1-201ENST00000450005 189 ntBASIC-1.78□□□□□ -2.69
SHMT2P34897 RNU6-194P-201ENST00000363862 105 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 MIR5582-201ENST00000579697 68 ntBASIC-1.79□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 188.1 ms