Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR892B-201ENST00000401279 77 ntBASIC0.43□□□□□ -2.34
CCDC39Q9UFE4 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 RNU6-1233P-201ENST00000362922 102 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 AC244250.2-201ENST00000418731 148 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 U6.103-201ENST00000637085 61 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 SNORD114-23-201ENST00000363536 72 ntBASIC0.41□□□□□ -2.34
CCDC39Q9UFE4 MIR593-201ENST00000384856 100 ntBASIC0.41□□□□□ -2.34
CCDC39Q9UFE4 Y_RNA.699-201ENST00000516803 93 ntBASIC0.41□□□□□ -2.34
CCDC39Q9UFE4 SNORA27.2-201ENST00000363365 126 ntBASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 RNU6-59P-201ENST00000384787 107 ntBASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 MIR193B-201ENST00000384907 83 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 RNA5SP193-201ENST00000410353 107 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 MIR4711-201ENST00000578274 70 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 MIR610-201ENST00000385139 96 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 RNA5SP134-201ENST00000516492 96 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR4280-201ENST00000582178 76 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR4315-1-201ENST00000636800 73 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR4315-2-201ENST00000640925 73 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR655-201ENST00000362159 97 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 AL445193.1-201ENST00000441183 141 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 RNU7-165P-201ENST00000458864 60 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 AP002795.1-201ENST00000534879 84 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 MIR4743-201ENST00000584576 69 ntBASIC0.36□□□□□ -2.35
CCDC39Q9UFE4 MIR145-201ENST00000384967 88 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 MIR1273G-201ENST00000577677 100 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 AC010487.4-201ENST00000637027 61 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 MIR4426-201ENST00000640330 63 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 RNU7-159P-201ENST00000459284 62 ntBASIC0.34□□□□□ -2.36
CCDC39Q9UFE4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.33□□□□□ -2.36
CCDC39Q9UFE4 RNU6-1326P-201ENST00000391262 107 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 SNORD38.3-201ENST00000516599 73 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 RNA5SP169-201ENST00000517268 117 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 MIR5683-201ENST00000636514 76 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 MIR4317-201ENST00000637586 65 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 RNA5SP214-201ENST00000363378 118 ntBASIC0.31□□□□□ -2.36
CCDC39Q9UFE4 MIR6851-201ENST00000617060 67 ntBASIC0.31□□□□□ -2.36
CCDC39Q9UFE4 RNU6-1047P-201ENST00000364418 107 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 RNU6-608P-201ENST00000383927 104 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 SNORA26.4-201ENST00000391188 123 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 SNORD18.2-201ENST00000459604 70 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 RNU6-361P-201ENST00000364454 107 ntBASIC0.29□□□□□ -2.36
CCDC39Q9UFE4 Y_RNA.345-201ENST00000365384 92 ntBASIC0.29□□□□□ -2.36
CCDC39Q9UFE4 MIR202-201ENST00000362219 110 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 RNY3P8-201ENST00000411366 126 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 AL353691.2-201ENST00000443795 59 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 MIR5093-201ENST00000583199 100 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 MIR924-201ENST00000638017 53 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 SNORD114-5-201ENST00000362928 70 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD114-9-201ENST00000364370 72 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD74.6-201ENST00000364796 70 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD49B-201ENST00000365172 72 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD115-33-201ENST00000363723 82 ntBASIC0.26□□□□□ -2.37
CCDC39Q9UFE4 MIR8087-201ENST00000612745 78 ntBASIC0.26□□□□□ -2.37
CCDC39Q9UFE4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 RNU6-46P-201ENST00000383860 107 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 RNU6-929P-201ENST00000384429 107 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 RNA5SP330-201ENST00000517096 96 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 MIR4514-201ENST00000581410 57 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 MIR1197-201ENST00000408818 88 ntBASIC0.24□□□□□ -2.37
CCDC39Q9UFE4 RNU6-300P-201ENST00000459080 104 ntBASIC0.24□□□□□ -2.37
CCDC39Q9UFE4 Y_RNA.206-201ENST00000364136 102 ntBASIC0.23□□□□□ -2.37
CCDC39Q9UFE4 SNORA17.4-201ENST00000391287 132 ntBASIC0.23□□□□□ -2.37
CCDC39Q9UFE4 SNORD22.1-201ENST00000516331 125 ntBASIC0.23□□□□□ -2.37
CCDC39Q9UFE4 MIR330-201ENST00000362196 94 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 MIR518B-201ENST00000385127 83 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 RNA5SP66-201ENST00000517178 101 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 RNY1P9-201ENST00000532431 109 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.21□□□□□ -2.38
CCDC39Q9UFE4 SNORA62.5-201ENST00000516634 120 ntBASIC0.21□□□□□ -2.38
CCDC39Q9UFE4 AL590491.3-201ENST00000610731 82 ntBASIC0.21□□□□□ -2.38
CCDC39Q9UFE4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
CCDC39Q9UFE4 AC138207.3-201ENST00000585289 166 ntBASIC0.2□□□□□ -2.38
CCDC39Q9UFE4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
CCDC39Q9UFE4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
CCDC39Q9UFE4 AC093726.3-201ENST00000637588 150 ntBASIC0.19□□□□□ -2.38
CCDC39Q9UFE4 SNORD114-17-201ENST00000364699 75 ntBASIC0.18□□□□□ -2.38
CCDC39Q9UFE4 MIR1295A-201ENST00000408463 79 ntBASIC0.18□□□□□ -2.38
CCDC39Q9UFE4 RNA5SP457-201ENST00000363657 124 ntBASIC0.17□□□□□ -2.38
CCDC39Q9UFE4 SNORD75.1-201ENST00000408373 60 ntBASIC0.17□□□□□ -2.38
CCDC39Q9UFE4 RNU6-176P-201ENST00000517196 105 ntBASIC0.17□□□□□ -2.38
CCDC39Q9UFE4 SNORD60-201ENST00000383903 83 ntBASIC0.16□□□□□ -2.38
CCDC39Q9UFE4 RPL35AP4-201ENST00000412007 102 ntBASIC0.16□□□□□ -2.38
CCDC39Q9UFE4 AP000533.3-201ENST00000447704 118 ntBASIC0.15□□□□□ -2.39
CCDC39Q9UFE4 AC023932.2-201ENST00000603176 175 ntBASIC0.15□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-1-201ENST00000578940 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-2-201ENST00000579107 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-3-201ENST00000579566 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-4-201ENST00000617599 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR507-201ENST00000385234 94 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 AC104692.1-201ENST00000472406 90 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 MIR2909-201ENST00000617113 69 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 Y_RNA.189-201ENST00000363959 112 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 RNA5SP63-201ENST00000391225 112 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 MIR4290-201ENST00000583807 95 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms