Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-34P-201ENST00000364874 107 ntBASIC-0.26□□□□□ -2.45
HOXD3P31249 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.26□□□□□ -2.45
HOXD3P31249 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.26□□□□□ -2.45
HOXD3P31249 MIR601-201ENST00000385256 79 ntBASIC-0.27□□□□□ -2.45
HOXD3P31249 MIR124-2-201ENST00000385081 109 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 MIR6851-201ENST00000617060 67 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 AL445584.3-201ENST00000617173 78 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 U6.111-201ENST00000636093 83 ntBASIC-0.28□□□□□ -2.45
HOXD3P31249 SNORA62.4-201ENST00000365504 151 ntBASIC-0.29□□□□□ -2.46
HOXD3P31249 AC005520.4-201ENST00000604337 90 ntBASIC-0.29□□□□□ -2.46
HOXD3P31249 AC093726.3-201ENST00000637588 150 ntBASIC-0.29□□□□□ -2.46
HOXD3P31249 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.3□□□□□ -2.46
HOXD3P31249 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
HOXD3P31249 MIR4320-201ENST00000636981 65 ntBASIC-0.3□□□□□ -2.46
HOXD3P31249 MT-TQ-201ENST00000387372 72 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 SNORD113-2-201ENST00000391082 72 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 AL500527.2-201ENST00000454105 95 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 RNU6-542P-201ENST00000516405 103 ntBASIC-0.31□□□□□ -2.46
HOXD3P31249 SNORD114-14-201ENST00000362723 75 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 MIR587-201ENST00000384845 96 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 MIR196A1-201ENST00000388006 70 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.32□□□□□ -2.46
HOXD3P31249 AC114801.3-201ENST00000510231 177 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 RNU6-539P-201ENST00000516665 103 ntBASIC-0.32□□□□□ -2.46
HOXD3P31249 SNORA25.4-201ENST00000363666 124 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 RNU6-800P-201ENST00000384473 103 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 SNORA3B-201ENST00000391305 131 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 SCARNA17-201ENST00000516183 144 ntBASIC-0.33□□□□□ -2.46
HOXD3P31249 RNU6-246P-201ENST00000384702 107 ntBASIC-0.34□□□□□ -2.46
HOXD3P31249 MIR527-201ENST00000385244 85 ntBASIC-0.34□□□□□ -2.46
HOXD3P31249 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.34□□□□□ -2.46
HOXD3P31249 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 SNORA41B-201ENST00000384785 128 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 MIR204-201ENST00000385200 110 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 RNU6-721P-201ENST00000410155 105 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 SNORD22.1-201ENST00000516331 125 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 MIR198-201ENST00000637333 62 ntBASIC-0.35□□□□□ -2.47
HOXD3P31249 MIR518B-201ENST00000385127 83 ntBASIC-0.36□□□□□ -2.47
HOXD3P31249 MIR1207-201ENST00000408249 87 ntBASIC-0.36□□□□□ -2.47
HOXD3P31249 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 RNU7-88P-201ENST00000458752 63 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 SNORA13-201ENST00000458790 133 ntBASIC-0.37□□□□□ -2.47
HOXD3P31249 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 SNORD114-25-201ENST00000363742 72 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 SNORD74.6-201ENST00000364796 70 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 RNU6-431P-201ENST00000383874 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 RNU6-10P-201ENST00000384036 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 RNU6-458P-201ENST00000384179 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 SNORD18.2-201ENST00000459604 70 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 U7.5-201ENST00000517224 61 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 MIR4324-201ENST00000584846 72 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 U6.58-201ENST00000613107 107 ntBASIC-0.38□□□□□ -2.47
HOXD3P31249 MIR4499-201ENST00000584834 69 ntBASIC-0.39□□□□□ -2.47
HOXD3P31249 MIR6738-201ENST00000619620 64 ntBASIC-0.39□□□□□ -2.47
HOXD3P31249 RNU6-924P-201ENST00000362926 108 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-1-201ENST00000578940 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-2-201ENST00000579107 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-3-201ENST00000579566 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR4511-201ENST00000582784 87 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 RNU6-92P-201ENST00000605893 104 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 MIR3179-4-201ENST00000617599 84 ntBASIC-0.4□□□□□ -2.47
HOXD3P31249 SNORD64-201ENST00000386683 67 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 SNORD83B-201ENST00000386745 93 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 RNA5SP461-201ENST00000516451 104 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 MIR378F-201ENST00000578143 78 ntBASIC-0.41□□□□□ -2.48
HOXD3P31249 RNA5SP192-201ENST00000364404 120 ntBASIC-0.42□□□□□ -2.48
HOXD3P31249 AP000533.3-201ENST00000447704 118 ntBASIC-0.42□□□□□ -2.48
HOXD3P31249 SNORA25.5-201ENST00000363782 126 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 SNORD114-3-201ENST00000364969 75 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 MIR3115-201ENST00000577915 68 ntBASIC-0.43□□□□□ -2.48
HOXD3P31249 SNORD60.1-201ENST00000362451 73 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 SNORD116-16-201ENST00000384533 92 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 MIR147A-201ENST00000385079 72 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 RNU7-134P-201ENST00000458997 64 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 uc_338.19-201ENST00000616808 99 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 MIR382-201ENST00000637119 76 ntBASIC-0.44□□□□□ -2.48
HOXD3P31249 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 MIR8485-201ENST00000401372 91 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 AC021146.6-201ENST00000514659 117 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 AC103706.3-201ENST00000636297 85 ntBASIC-0.45□□□□□ -2.48
HOXD3P31249 RNU6-598P-201ENST00000364017 105 ntBASIC-0.46□□□□□ -2.48
HOXD3P31249 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.46□□□□□ -2.48
HOXD3P31249 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.46□□□□□ -2.48
HOXD3P31249 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 MIR4306-201ENST00000583390 91 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 U2.18-201ENST00000622185 84 ntBASIC-0.47□□□□□ -2.48
HOXD3P31249 RNU6-471P-201ENST00000383944 106 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 340.4 ms