Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
CHMP3Q9Y3E7 RNU6-246P-201ENST00000384702 107 ntBASIC0.41□□□□□ -2.34
CHMP3Q9Y3E7 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.41□□□□□ -2.34
CHMP3Q9Y3E7 Y_RNA.698-201ENST00000516798 118 ntBASIC0.41□□□□□ -2.34
CHMP3Q9Y3E7 AC104408.1-201ENST00000605241 170 ntBASIC0.41□□□□□ -2.34
CHMP3Q9Y3E7 AL391099.1-201ENST00000624635 187 ntBASIC0.41□□□□□ -2.34
CHMP3Q9Y3E7 RNU7-55P-201ENST00000459426 62 ntBASIC0.4□□□□□ -2.35
CHMP3Q9Y3E7 MIR7978-201ENST00000636158 59 ntBASIC0.4□□□□□ -2.35
CHMP3Q9Y3E7 MIR4315-1-201ENST00000636800 73 ntBASIC0.4□□□□□ -2.35
CHMP3Q9Y3E7 MIR4315-2-201ENST00000640925 73 ntBASIC0.4□□□□□ -2.35
CHMP3Q9Y3E7 RNU6-455P-201ENST00000384681 107 ntBASIC0.39□□□□□ -2.35
CHMP3Q9Y3E7 SNORD116.2-201ENST00000391251 93 ntBASIC0.39□□□□□ -2.35
CHMP3Q9Y3E7 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.39□□□□□ -2.35
CHMP3Q9Y3E7 MIR4464-201ENST00000580818 92 ntBASIC0.38□□□□□ -2.35
CHMP3Q9Y3E7 RNU6-520P-201ENST00000384717 104 ntBASIC0.37□□□□□ -2.35
CHMP3Q9Y3E7 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
CHMP3Q9Y3E7 AC108676.2-201ENST00000605225 163 ntBASIC0.37□□□□□ -2.35
CHMP3Q9Y3E7 MIR6888-201ENST00000621977 67 ntBASIC0.37□□□□□ -2.35
CHMP3Q9Y3E7 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.37□□□□□ -2.35
CHMP3Q9Y3E7 MIR610-201ENST00000385139 96 ntBASIC0.36□□□□□ -2.35
CHMP3Q9Y3E7 RNU6-1133P-201ENST00000410963 100 ntBASIC0.36□□□□□ -2.35
CHMP3Q9Y3E7 RNU6-172P-201ENST00000411000 93 ntBASIC0.36□□□□□ -2.35
CHMP3Q9Y3E7 MIR4514-201ENST00000581410 57 ntBASIC0.36□□□□□ -2.35
CHMP3Q9Y3E7 MIR148A-201ENST00000362215 68 ntBASIC0.35□□□□□ -2.35
CHMP3Q9Y3E7 RNU6-973P-201ENST00000364690 107 ntBASIC0.35□□□□□ -2.35
CHMP3Q9Y3E7 RNU6-900P-201ENST00000384498 102 ntBASIC0.35□□□□□ -2.35
CHMP3Q9Y3E7 MIR145-201ENST00000384967 88 ntBASIC0.35□□□□□ -2.35
CHMP3Q9Y3E7 RNU7-119P-201ENST00000459279 63 ntBASIC0.35□□□□□ -2.35
CHMP3Q9Y3E7 MIR5704-201ENST00000584029 77 ntBASIC0.35□□□□□ -2.35
CHMP3Q9Y3E7 SNORA40.16-201ENST00000517238 121 ntBASIC0.34□□□□□ -2.36
CHMP3Q9Y3E7 MIR7110-201ENST00000612638 86 ntBASIC0.34□□□□□ -2.36
CHMP3Q9Y3E7 SNORD114-5-201ENST00000362928 70 ntBASIC0.33□□□□□ -2.36
CHMP3Q9Y3E7 RNA5SP214-201ENST00000363378 118 ntBASIC0.33□□□□□ -2.36
CHMP3Q9Y3E7 RNU6-598P-201ENST00000364017 105 ntBASIC0.33□□□□□ -2.36
CHMP3Q9Y3E7 RNU6-141P-201ENST00000410499 105 ntBASIC0.33□□□□□ -2.36
CHMP3Q9Y3E7 U2.18-201ENST00000622185 84 ntBASIC0.33□□□□□ -2.36
CHMP3Q9Y3E7 MIR429-201ENST00000362106 83 ntBASIC0.32□□□□□ -2.36
CHMP3Q9Y3E7 MIR892B-201ENST00000401279 77 ntBASIC0.32□□□□□ -2.36
CHMP3Q9Y3E7 AC244250.2-201ENST00000418731 148 ntBASIC0.32□□□□□ -2.36
CHMP3Q9Y3E7 AL445584.3-201ENST00000617173 78 ntBASIC0.32□□□□□ -2.36
CHMP3Q9Y3E7 MIR924-201ENST00000638017 53 ntBASIC0.32□□□□□ -2.36
CHMP3Q9Y3E7 AC096531.1-201ENST00000419107 107 ntBASIC0.31□□□□□ -2.36
CHMP3Q9Y3E7 MIR8087-201ENST00000612745 78 ntBASIC0.31□□□□□ -2.36
CHMP3Q9Y3E7 MIR8068-201ENST00000618032 68 ntBASIC0.31□□□□□ -2.36
CHMP3Q9Y3E7 SNORA42.1-201ENST00000363515 137 ntBASIC0.3□□□□□ -2.36
CHMP3Q9Y3E7 RNU6-810P-201ENST00000364001 107 ntBASIC0.3□□□□□ -2.36
CHMP3Q9Y3E7 RNU6-936P-201ENST00000384005 107 ntBASIC0.3□□□□□ -2.36
CHMP3Q9Y3E7 RNU7-165P-201ENST00000458864 60 ntBASIC0.3□□□□□ -2.36
CHMP3Q9Y3E7 RNA5SP330-201ENST00000517096 96 ntBASIC0.3□□□□□ -2.36
CHMP3Q9Y3E7 MIR330-201ENST00000362196 94 ntBASIC0.29□□□□□ -2.36
CHMP3Q9Y3E7 MIR1197-201ENST00000408818 88 ntBASIC0.29□□□□□ -2.36
CHMP3Q9Y3E7 RNU7-88P-201ENST00000458752 63 ntBASIC0.29□□□□□ -2.36
CHMP3Q9Y3E7 RNU7-159P-201ENST00000459284 62 ntBASIC0.29□□□□□ -2.36
CHMP3Q9Y3E7 SNORD114-9-201ENST00000364370 72 ntBASIC0.28□□□□□ -2.36
CHMP3Q9Y3E7 SNORD56B-201ENST00000384713 71 ntBASIC0.28□□□□□ -2.36
CHMP3Q9Y3E7 U7.5-201ENST00000517224 61 ntBASIC0.28□□□□□ -2.36
CHMP3Q9Y3E7 MIR579-201ENST00000385221 98 ntBASIC0.27□□□□□ -2.37
CHMP3Q9Y3E7 Y_RNA.722-201ENST00000517279 114 ntBASIC0.27□□□□□ -2.37
CHMP3Q9Y3E7 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.27□□□□□ -2.37
CHMP3Q9Y3E7 SNORA62.5-201ENST00000516634 120 ntBASIC0.26□□□□□ -2.37
CHMP3Q9Y3E7 Y_RNA.115-201ENST00000363272 98 ntBASIC0.25□□□□□ -2.37
CHMP3Q9Y3E7 SNORA62.4-201ENST00000365504 151 ntBASIC0.25□□□□□ -2.37
CHMP3Q9Y3E7 SNORA40B-201ENST00000385573 128 ntBASIC0.25□□□□□ -2.37
CHMP3Q9Y3E7 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
CHMP3Q9Y3E7 MIR4743-201ENST00000584576 69 ntBASIC0.25□□□□□ -2.37
CHMP3Q9Y3E7 MIR655-201ENST00000362159 97 ntBASIC0.24□□□□□ -2.37
CHMP3Q9Y3E7 RNU6-929P-201ENST00000384429 107 ntBASIC0.24□□□□□ -2.37
CHMP3Q9Y3E7 RNU6-901P-201ENST00000384593 106 ntBASIC0.24□□□□□ -2.37
CHMP3Q9Y3E7 RNU6-1262P-201ENST00000516217 96 ntBASIC0.24□□□□□ -2.37
CHMP3Q9Y3E7 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.23□□□□□ -2.37
CHMP3Q9Y3E7 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
CHMP3Q9Y3E7 RNU6-1184P-201ENST00000384588 108 ntBASIC0.21□□□□□ -2.38
CHMP3Q9Y3E7 AL445193.1-201ENST00000441183 141 ntBASIC0.21□□□□□ -2.38
CHMP3Q9Y3E7 MIR4490-201ENST00000582647 84 ntBASIC0.21□□□□□ -2.38
CHMP3Q9Y3E7 AC023932.2-201ENST00000603176 175 ntBASIC0.21□□□□□ -2.38
CHMP3Q9Y3E7 MIR6854-201ENST00000614935 69 ntBASIC0.21□□□□□ -2.38
CHMP3Q9Y3E7 RNU7-151P-201ENST00000516930 53 ntBASIC0.2□□□□□ -2.38
CHMP3Q9Y3E7 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.2□□□□□ -2.38
CHMP3Q9Y3E7 MIR6718-201ENST00000616153 80 ntBASIC0.2□□□□□ -2.38
CHMP3Q9Y3E7 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.2□□□□□ -2.38
CHMP3Q9Y3E7 RNU6-696P-201ENST00000390834 107 ntBASIC0.19□□□□□ -2.38
CHMP3Q9Y3E7 MIR1295A-201ENST00000408463 79 ntBASIC0.19□□□□□ -2.38
CHMP3Q9Y3E7 AC114755.3-201ENST00000481111 251 ntBASIC0.19□□□□□ -2.38
CHMP3Q9Y3E7 MIR124-2-201ENST00000385081 109 ntBASIC0.18□□□□□ -2.38
CHMP3Q9Y3E7 RNU6-1174P-201ENST00000517278 101 ntBASIC0.18□□□□□ -2.38
CHMP3Q9Y3E7 RNU6-808P-201ENST00000391233 108 ntBASIC0.15□□□□□ -2.39
CHMP3Q9Y3E7 SNORD49B-201ENST00000365172 72 ntBASIC0.14□□□□□ -2.39
CHMP3Q9Y3E7 RNU6-1267P-201ENST00000410747 107 ntBASIC0.14□□□□□ -2.39
CHMP3Q9Y3E7 MIR4280-201ENST00000582178 76 ntBASIC0.14□□□□□ -2.39
CHMP3Q9Y3E7 MIR2909-201ENST00000617113 69 ntBASIC0.14□□□□□ -2.39
CHMP3Q9Y3E7 SNORD57-201ENST00000448188 72 ntBASIC0.13□□□□□ -2.39
CHMP3Q9Y3E7 RNA5SP457-201ENST00000363657 124 ntBASIC0.12□□□□□ -2.39
CHMP3Q9Y3E7 RNA5SP63-201ENST00000391225 112 ntBASIC0.12□□□□□ -2.39
CHMP3Q9Y3E7 Y_RNA.613-201ENST00000410726 97 ntBASIC0.12□□□□□ -2.39
CHMP3Q9Y3E7 RNU6-980P-201ENST00000516925 103 ntBASIC0.12□□□□□ -2.39
CHMP3Q9Y3E7 RNU6-924P-201ENST00000362926 108 ntBASIC0.11□□□□□ -2.39
CHMP3Q9Y3E7 MIR548AA1-201ENST00000384971 97 ntBASIC0.11□□□□□ -2.39
CHMP3Q9Y3E7 Y_RNA.30-201ENST00000362572 97 ntBASIC0.1□□□□□ -2.39
CHMP3Q9Y3E7 SNORD38.3-201ENST00000516599 73 ntBASIC0.1□□□□□ -2.39
CHMP3Q9Y3E7 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms