Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 RNU7-119P-201ENST00000459279 63 ntBASIC0.56□□□□□ -2.32
USP40Q9NVE5 AP000676.1-201ENST00000533307 52 ntBASIC0.56□□□□□ -2.32
USP40Q9NVE5 MIR7110-201ENST00000612638 86 ntBASIC0.56□□□□□ -2.32
USP40Q9NVE5 RNU6-127P-201ENST00000390897 107 ntBASIC0.55□□□□□ -2.32
USP40Q9NVE5 RNA5SP470-201ENST00000516463 106 ntBASIC0.55□□□□□ -2.32
USP40Q9NVE5 MIR4464-201ENST00000580818 92 ntBASIC0.55□□□□□ -2.32
USP40Q9NVE5 RNA5SP257-201ENST00000363023 116 ntBASIC0.54□□□□□ -2.32
USP40Q9NVE5 RNU6-598P-201ENST00000364017 105 ntBASIC0.54□□□□□ -2.32
USP40Q9NVE5 RNU6-815P-201ENST00000384080 113 ntBASIC0.54□□□□□ -2.32
USP40Q9NVE5 MIR548H2-201ENST00000408874 88 ntBASIC0.54□□□□□ -2.32
USP40Q9NVE5 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.54□□□□□ -2.32
USP40Q9NVE5 MIRLET7D-201ENST00000362263 87 ntBASIC0.53□□□□□ -2.32
USP40Q9NVE5 Y_RNA.379-201ENST00000365653 102 ntBASIC0.53□□□□□ -2.32
USP40Q9NVE5 SNORA40B-201ENST00000385573 128 ntBASIC0.53□□□□□ -2.32
USP40Q9NVE5 U2.18-201ENST00000622185 84 ntBASIC0.53□□□□□ -2.32
USP40Q9NVE5 Y_RNA.68-201ENST00000362881 102 ntBASIC0.52□□□□□ -2.33
USP40Q9NVE5 RNU6-753P-201ENST00000363926 107 ntBASIC0.52□□□□□ -2.33
USP40Q9NVE5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.52□□□□□ -2.33
USP40Q9NVE5 RNU6-35P-201ENST00000384530 107 ntBASIC0.52□□□□□ -2.33
USP40Q9NVE5 MIR4490-201ENST00000582647 84 ntBASIC0.52□□□□□ -2.33
USP40Q9NVE5 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.52□□□□□ -2.33
USP40Q9NVE5 MIR6888-201ENST00000621977 67 ntBASIC0.5□□□□□ -2.33
USP40Q9NVE5 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.49□□□□□ -2.33
USP40Q9NVE5 MIR579-201ENST00000385221 98 ntBASIC0.49□□□□□ -2.33
USP40Q9NVE5 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.49□□□□□ -2.33
USP40Q9NVE5 Y_RNA.178-201ENST00000363832 102 ntBASIC0.48□□□□□ -2.33
USP40Q9NVE5 MIR643-201ENST00000385267 97 ntBASIC0.48□□□□□ -2.33
USP40Q9NVE5 MIR4432-201ENST00000581823 84 ntBASIC0.48□□□□□ -2.33
USP40Q9NVE5 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.48□□□□□ -2.33
USP40Q9NVE5 RNA5SP98-201ENST00000363158 137 ntBASIC0.47□□□□□ -2.33
USP40Q9NVE5 RNU4-33P-201ENST00000364316 85 ntBASIC0.47□□□□□ -2.33
USP40Q9NVE5 SNORA50A-201ENST00000384225 134 ntBASIC0.47□□□□□ -2.33
USP40Q9NVE5 AC108740.1-201ENST00000498629 225 ntBASIC0.47□□□□□ -2.33
USP40Q9NVE5 MIR548X-201ENST00000580069 75 ntBASIC0.47□□□□□ -2.33
USP40Q9NVE5 uc_338.36-201ENST00000622331 158 ntBASIC0.47□□□□□ -2.33
USP40Q9NVE5 RNU7-55P-201ENST00000459426 62 ntBASIC0.46□□□□□ -2.34
USP40Q9NVE5 AC108676.2-201ENST00000605225 163 ntBASIC0.46□□□□□ -2.34
USP40Q9NVE5 AC090625.1-201ENST00000357130 210 ntBASIC0.45□□□□□ -2.34
USP40Q9NVE5 RNU6-924P-201ENST00000362926 108 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 RNA5SP62-201ENST00000363457 110 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 RNU6-1262P-201ENST00000516217 96 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 SNORA62.5-201ENST00000516634 120 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 RNU7-151P-201ENST00000516930 53 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 AC069113.3-201ENST00000521019 150 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 MIR4514-201ENST00000581410 57 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 MIR6507-201ENST00000613630 70 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 AL445584.3-201ENST00000617173 78 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 MIR6514-201ENST00000622549 70 ntBASIC0.44□□□□□ -2.34
USP40Q9NVE5 Y_RNA.433-201ENST00000384089 102 ntBASIC0.43□□□□□ -2.34
USP40Q9NVE5 U7.5-201ENST00000517224 61 ntBASIC0.43□□□□□ -2.34
USP40Q9NVE5 MIR2909-201ENST00000617113 69 ntBASIC0.43□□□□□ -2.34
USP40Q9NVE5 MIR8068-201ENST00000618032 68 ntBASIC0.43□□□□□ -2.34
USP40Q9NVE5 AL391099.1-201ENST00000624635 187 ntBASIC0.43□□□□□ -2.34
USP40Q9NVE5 RNU7-88P-201ENST00000458752 63 ntBASIC0.42□□□□□ -2.34
USP40Q9NVE5 MIR5704-201ENST00000584029 77 ntBASIC0.42□□□□□ -2.34
USP40Q9NVE5 Y_RNA.69-201ENST00000362885 109 ntBASIC0.41□□□□□ -2.34
USP40Q9NVE5 RNU6-419P-201ENST00000517030 63 ntBASIC0.41□□□□□ -2.34
USP40Q9NVE5 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.41□□□□□ -2.34
USP40Q9NVE5 MIR429-201ENST00000362106 83 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 RNU6-973P-201ENST00000364690 107 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 MIR125B1-201ENST00000385236 88 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 RNA5SP163-201ENST00000410304 99 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 RNU6-1267P-201ENST00000410747 107 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 AC096531.1-201ENST00000419107 107 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 RNU6-180P-201ENST00000516697 61 ntBASIC0.4□□□□□ -2.35
USP40Q9NVE5 RNU6-900P-201ENST00000384498 102 ntBASIC0.39□□□□□ -2.35
USP40Q9NVE5 MIR548F3-201ENST00000408509 87 ntBASIC0.39□□□□□ -2.35
USP40Q9NVE5 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.39□□□□□ -2.35
USP40Q9NVE5 snoR1.1-201ENST00000628177 80 ntBASIC0.39□□□□□ -2.35
USP40Q9NVE5 RNU6-455P-201ENST00000384681 107 ntBASIC0.38□□□□□ -2.35
USP40Q9NVE5 RNU6-696P-201ENST00000390834 107 ntBASIC0.38□□□□□ -2.35
USP40Q9NVE5 SNORD57-201ENST00000448188 72 ntBASIC0.38□□□□□ -2.35
USP40Q9NVE5 RNU6-1174P-201ENST00000517278 101 ntBASIC0.38□□□□□ -2.35
USP40Q9NVE5 AC023932.2-201ENST00000603176 175 ntBASIC0.38□□□□□ -2.35
USP40Q9NVE5 SNORD56B-201ENST00000384713 71 ntBASIC0.37□□□□□ -2.35
USP40Q9NVE5 RNA5SP63-201ENST00000391225 112 ntBASIC0.37□□□□□ -2.35
USP40Q9NVE5 RNU6-1206P-201ENST00000516339 103 ntBASIC0.37□□□□□ -2.35
USP40Q9NVE5 CR383656.4-201ENST00000546909 122 ntBASIC0.37□□□□□ -2.35
USP40Q9NVE5 MTRNR2L9-201ENST00000622562 75 ntBASIC0.37□□□□□ -2.35
USP40Q9NVE5 RNU6-974P-201ENST00000384099 108 ntBASIC0.36□□□□□ -2.35
USP40Q9NVE5 RNU6-930P-201ENST00000390938 100 ntBASIC0.36□□□□□ -2.35
USP40Q9NVE5 AC244250.2-201ENST00000418731 148 ntBASIC0.36□□□□□ -2.35
USP40Q9NVE5 RNU7-160P-201ENST00000516660 62 ntBASIC0.36□□□□□ -2.35
USP40Q9NVE5 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.36□□□□□ -2.35
USP40Q9NVE5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
USP40Q9NVE5 RNU6-1133P-201ENST00000410963 100 ntBASIC0.35□□□□□ -2.35
USP40Q9NVE5 MIR655-201ENST00000362159 97 ntBASIC0.34□□□□□ -2.36
USP40Q9NVE5 MIR148A-201ENST00000362215 68 ntBASIC0.34□□□□□ -2.36
USP40Q9NVE5 MIR593-201ENST00000384856 100 ntBASIC0.34□□□□□ -2.36
USP40Q9NVE5 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
USP40Q9NVE5 MIR548AA1-201ENST00000384971 97 ntBASIC0.33□□□□□ -2.36
USP40Q9NVE5 AC114755.3-201ENST00000481111 251 ntBASIC0.33□□□□□ -2.36
USP40Q9NVE5 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.33□□□□□ -2.36
USP40Q9NVE5 SNORA62.4-201ENST00000365504 151 ntBASIC0.32□□□□□ -2.36
USP40Q9NVE5 AC104408.1-201ENST00000605241 170 ntBASIC0.32□□□□□ -2.36
USP40Q9NVE5 Y_RNA.139-201ENST00000363464 102 ntBASIC0.31□□□□□ -2.36
USP40Q9NVE5 SNORA42.1-201ENST00000363515 137 ntBASIC0.31□□□□□ -2.36
USP40Q9NVE5 RNU6-838P-201ENST00000363399 108 ntBASIC0.29□□□□□ -2.36
USP40Q9NVE5 MIR145-201ENST00000384967 88 ntBASIC0.29□□□□□ -2.36
USP40Q9NVE5 Y_RNA.613-201ENST00000410726 97 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 248.7 ms