Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 MIR4796-201ENST00000580742 81 ntBASIC-1.11□□□□□ -2.59
RPUSD3Q6P087 RNU5F-1-201ENST00000362507 117 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 RNU6-645P-201ENST00000364649 106 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 RNU6-880P-201ENST00000384526 107 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 MIR548Q-201ENST00000408404 100 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 RNU6-659P-201ENST00000516454 104 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 RNU6-980P-201ENST00000516925 103 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 RNU6-255P-201ENST00000516957 105 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 MIR3170-201ENST00000582699 77 ntBASIC-1.12□□□□□ -2.59
RPUSD3Q6P087 RNU6-766P-201ENST00000362478 107 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 RNU6-330P-201ENST00000363015 107 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 RNA5SP405-201ENST00000363059 114 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 RNU6-752P-201ENST00000516376 102 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 RNU6-537P-201ENST00000517277 103 ntBASIC-1.13□□□□□ -2.59
RPUSD3Q6P087 SNORD58A-201ENST00000383875 65 ntBASIC-1.14□□□□□ -2.59
RPUSD3Q6P087 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.14□□□□□ -2.59
RPUSD3Q6P087 RNU6-972P-201ENST00000391208 107 ntBASIC-1.14□□□□□ -2.59
RPUSD3Q6P087 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.14□□□□□ -2.59
RPUSD3Q6P087 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.14□□□□□ -2.59
RPUSD3Q6P087 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.14□□□□□ -2.59
RPUSD3Q6P087 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.15□□□□□ -2.59
RPUSD3Q6P087 MIR581-201ENST00000384895 96 ntBASIC-1.15□□□□□ -2.59
RPUSD3Q6P087 RNU6-982P-201ENST00000516216 102 ntBASIC-1.15□□□□□ -2.59
RPUSD3Q6P087 RNU6-118P-201ENST00000516552 102 ntBASIC-1.15□□□□□ -2.59
RPUSD3Q6P087 snoU13.10-201ENST00000459301 103 ntBASIC-1.16□□□□□ -2.6
RPUSD3Q6P087 MIR4441-201ENST00000582623 100 ntBASIC-1.16□□□□□ -2.6
RPUSD3Q6P087 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.17□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.17□□□□□ -2.6
RPUSD3Q6P087 SNORD1B-201ENST00000363091 84 ntBASIC-1.17□□□□□ -2.6
RPUSD3Q6P087 MIR3139-201ENST00000579145 76 ntBASIC-1.17□□□□□ -2.6
RPUSD3Q6P087 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.17□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.18□□□□□ -2.6
RPUSD3Q6P087 RNU6-974P-201ENST00000384099 108 ntBASIC-1.18□□□□□ -2.6
RPUSD3Q6P087 SNORA41B-201ENST00000384785 128 ntBASIC-1.18□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.18□□□□□ -2.6
RPUSD3Q6P087 SCARNA23-201ENST00000516060 130 ntBASIC-1.18□□□□□ -2.6
RPUSD3Q6P087 MIR365A-201ENST00000362260 87 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 SNORD116-14-201ENST00000383894 92 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 SNORD116-17-201ENST00000383929 92 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 SNORD116-15-201ENST00000384445 92 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 SNORD116-21-201ENST00000384507 92 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 SNORD116-19-201ENST00000384729 92 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 SNORD77.2-201ENST00000391045 68 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 RNY3P8-201ENST00000411366 126 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 RNU6-904P-201ENST00000516206 101 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 MIR548V-201ENST00000584165 80 ntBASIC-1.19□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 RNU6-497P-201ENST00000365316 104 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 RNU6-887P-201ENST00000410660 100 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 MIR7978-201ENST00000636158 59 ntBASIC-1.2□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 RNU6-698P-201ENST00000363523 107 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 RNU6-34P-201ENST00000364874 107 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 SNORD116-16-201ENST00000384533 92 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 MIR125B1-201ENST00000385236 88 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 RNU6-604P-201ENST00000390917 100 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 SNORD113-2-201ENST00000391082 72 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 MIR1468-201ENST00000410600 86 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 U4.2-201ENST00000618561 85 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.21□□□□□ -2.6
RPUSD3Q6P087 RNU6-624P-201ENST00000363411 107 ntBASIC-1.22□□□□□ -2.6
RPUSD3Q6P087 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.22□□□□□ -2.6
RPUSD3Q6P087 MIR496-201ENST00000385226 102 ntBASIC-1.22□□□□□ -2.6
RPUSD3Q6P087 AL450471.1-201ENST00000447509 127 ntBASIC-1.22□□□□□ -2.6
RPUSD3Q6P087 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.22□□□□□ -2.6
RPUSD3Q6P087 MIR4748-201ENST00000578076 82 ntBASIC-1.22□□□□□ -2.6
RPUSD3Q6P087 RNU6-669P-201ENST00000365575 107 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 MIR601-201ENST00000385256 79 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 RNU6-995P-201ENST00000391244 107 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 AC074348.1-201ENST00000426503 132 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 RNU7-61P-201ENST00000515897 61 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 RNU6-68P-201ENST00000516576 104 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 MIR23C-201ENST00000579846 100 ntBASIC-1.23□□□□□ -2.61
RPUSD3Q6P087 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 SNORD116-10-201ENST00000363791 102 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 MIR630-201ENST00000384957 97 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 MT-TM-201ENST00000387377 68 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 MIR1302-5-201ENST00000408164 150 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 MIR1236-201ENST00000408340 102 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 U6.97-201ENST00000636904 101 ntBASIC-1.24□□□□□ -2.61
RPUSD3Q6P087 RNY4P27-201ENST00000363341 96 ntBASIC-1.25□□□□□ -2.61
RPUSD3Q6P087 RNU6-523P-201ENST00000516304 54 ntBASIC-1.25□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms