Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU6-168P-201ENST00000516189 101 ntBASIC-1.2□□□□□ -2.6
SHMT2P34897 RNU6-267P-201ENST00000516714 103 ntBASIC-1.2□□□□□ -2.6
SHMT2P34897 RNU6-158P-201ENST00000517104 100 ntBASIC-1.2□□□□□ -2.6
SHMT2P34897 AL365222.1-201ENST00000614661 98 ntBASIC-1.2□□□□□ -2.6
SHMT2P34897 RNU6-598P-201ENST00000364017 105 ntBASIC-1.21□□□□□ -2.6
SHMT2P34897 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.21□□□□□ -2.6
SHMT2P34897 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.21□□□□□ -2.6
SHMT2P34897 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.21□□□□□ -2.6
SHMT2P34897 MIR3165-201ENST00000579874 75 ntBASIC-1.21□□□□□ -2.6
SHMT2P34897 MIR4490-201ENST00000582647 84 ntBASIC-1.21□□□□□ -2.6
SHMT2P34897 RNU6-604P-201ENST00000390917 100 ntBASIC-1.22□□□□□ -2.6
SHMT2P34897 AC093729.1-201ENST00000513074 128 ntBASIC-1.22□□□□□ -2.6
SHMT2P34897 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.22□□□□□ -2.6
SHMT2P34897 RNU6-557P-201ENST00000516842 110 ntBASIC-1.22□□□□□ -2.6
SHMT2P34897 MIR4520-1-201ENST00000582609 70 ntBASIC-1.22□□□□□ -2.6
SHMT2P34897 MIR3675-201ENST00000583661 73 ntBASIC-1.22□□□□□ -2.6
SHMT2P34897 MIR548C-201ENST00000384815 97 ntBASIC-1.23□□□□□ -2.61
SHMT2P34897 RNU6-696P-201ENST00000390834 107 ntBASIC-1.23□□□□□ -2.61
SHMT2P34897 RNA5SP461-201ENST00000516451 104 ntBASIC-1.23□□□□□ -2.61
SHMT2P34897 MIR5591-201ENST00000578248 65 ntBASIC-1.23□□□□□ -2.61
SHMT2P34897 RNU6-630P-201ENST00000391258 106 ntBASIC-1.24□□□□□ -2.61
SHMT2P34897 MIR548Q-201ENST00000408404 100 ntBASIC-1.24□□□□□ -2.61
SHMT2P34897 RNU6-303P-201ENST00000517091 106 ntBASIC-1.24□□□□□ -2.61
SHMT2P34897 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.25□□□□□ -2.61
SHMT2P34897 RNU6-79P-201ENST00000362511 107 ntBASIC-1.25□□□□□ -2.61
SHMT2P34897 SNORA8.1-201ENST00000384250 140 ntBASIC-1.25□□□□□ -2.61
SHMT2P34897 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.25□□□□□ -2.61
SHMT2P34897 HLA-S-202ENST00000425174 53 ntBASIC-1.25□□□□□ -2.61
SHMT2P34897 MIR548BB-201ENST00000626714 66 ntBASIC-1.25□□□□□ -2.61
SHMT2P34897 RNU6-81P-201ENST00000365608 104 ntBASIC-1.26□□□□□ -2.61
SHMT2P34897 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.26□□□□□ -2.61
SHMT2P34897 RNU6-402P-201ENST00000410678 103 ntBASIC-1.26□□□□□ -2.61
SHMT2P34897 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.26□□□□□ -2.61
SHMT2P34897 U2.18-201ENST00000622185 84 ntBASIC-1.26□□□□□ -2.61
SHMT2P34897 SNORD45.1-201ENST00000363181 77 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 RNU6-698P-201ENST00000363523 107 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 SNORD115-37-201ENST00000363768 82 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 RNU6-686P-201ENST00000364839 107 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 RNU6-34P-201ENST00000364874 107 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 MIR4770-201ENST00000579149 58 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 MIR548V-201ENST00000584165 80 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 MIR4320-201ENST00000636981 65 ntBASIC-1.27□□□□□ -2.61
SHMT2P34897 MIR450A1-201ENST00000362262 91 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 RNA5SP86-201ENST00000390869 98 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 MIR3671-201ENST00000580455 88 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 MIR3668-201ENST00000582138 75 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 AP001318.4-201ENST00000616637 121 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 MALAT1.1-201ENST00000618249 95 ntBASIC-1.28□□□□□ -2.61
SHMT2P34897 RNU6-226P-201ENST00000363778 107 ntBASIC-1.29□□□□□ -2.62
SHMT2P34897 MIR488-201ENST00000365739 83 ntBASIC-1.29□□□□□ -2.62
SHMT2P34897 SNORD116-22-201ENST00000384430 92 ntBASIC-1.3□□□□□ -2.62
SHMT2P34897 RNU6-258P-201ENST00000390884 101 ntBASIC-1.3□□□□□ -2.62
SHMT2P34897 MIR4484-201ENST00000582855 83 ntBASIC-1.3□□□□□ -2.62
SHMT2P34897 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.3□□□□□ -2.62
SHMT2P34897 RNU6-834P-201ENST00000362367 110 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 MIR630-201ENST00000384957 97 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 SNORD113-2-201ENST00000391082 72 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 AC018880.2-201ENST00000414265 201 ntBASIC-1.31□□□□□ -2.62
SHMT2P34897 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 RNU6-675P-201ENST00000384236 104 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 SNORA41B-201ENST00000384785 128 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 MIR664A-201ENST00000626086 82 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 MIR2052-201ENST00000636055 55 ntBASIC-1.32□□□□□ -2.62
SHMT2P34897 RNU6-129P-201ENST00000391022 107 ntBASIC-1.33□□□□□ -2.62
SHMT2P34897 RNY4P18-201ENST00000391107 89 ntBASIC-1.33□□□□□ -2.62
SHMT2P34897 RNU6-400P-201ENST00000391173 106 ntBASIC-1.33□□□□□ -2.62
SHMT2P34897 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.33□□□□□ -2.62
SHMT2P34897 AL031737.1-201ENST00000450125 223 ntBASIC-1.33□□□□□ -2.62
SHMT2P34897 MIR3170-201ENST00000582699 77 ntBASIC-1.33□□□□□ -2.62
SHMT2P34897 SNORD113.1-201ENST00000363280 73 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 RNU6-640P-201ENST00000363693 105 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 RNU6-563P-201ENST00000364872 108 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 SNORD116-16-201ENST00000384533 92 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 AC006160.2-201ENST00000637708 154 ntBASIC-1.34□□□□□ -2.62
SHMT2P34897 RNU6-22P-201ENST00000384355 107 ntBASIC-1.35□□□□□ -2.63
SHMT2P34897 MIR487B-201ENST00000385021 84 ntBASIC-1.35□□□□□ -2.63
SHMT2P34897 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.35□□□□□ -2.63
SHMT2P34897 SNORD1B-201ENST00000363091 84 ntBASIC-1.36□□□□□ -2.63
SHMT2P34897 SNORD45A-201ENST00000384512 84 ntBASIC-1.36□□□□□ -2.63
SHMT2P34897 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.36□□□□□ -2.63
SHMT2P34897 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.36□□□□□ -2.63
SHMT2P34897 MIR409-201ENST00000362237 79 ntBASIC-1.37□□□□□ -2.63
SHMT2P34897 MIR548H1-201ENST00000408610 102 ntBASIC-1.37□□□□□ -2.63
SHMT2P34897 RNA5SP266-201ENST00000410273 108 ntBASIC-1.37□□□□□ -2.63
SHMT2P34897 SNORA40.13-201ENST00000516379 120 ntBASIC-1.37□□□□□ -2.63
SHMT2P34897 AC120024.2-201ENST00000576526 175 ntBASIC-1.37□□□□□ -2.63
SHMT2P34897 RNA5SP215-201ENST00000363440 122 ntBASIC-1.38□□□□□ -2.63
SHMT2P34897 MT-TR-201ENST00000387439 65 ntBASIC-1.38□□□□□ -2.63
SHMT2P34897 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
SHMT2P34897 MIR429-201ENST00000362106 83 ntBASIC-1.39□□□□□ -2.63
SHMT2P34897 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.39□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 243.9 ms