Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORD71-201ENST00000411292 86 ntBASIC1.09□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-419P-201ENST00000517030 63 ntBASIC1.09□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORA25.18-201ENST00000607153 114 ntBASIC1.09□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORA40.8-201ENST00000411034 126 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-848P-201ENST00000515948 107 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-617P-201ENST00000516147 107 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-473P-201ENST00000516164 107 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-1049P-201ENST00000516414 107 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU7-160P-201ENST00000516660 62 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-782P-201ENST00000516852 104 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 MIR4661-201ENST00000582720 75 ntBASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-502P-201ENST00000362419 108 ntBASIC1.07□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 OR2A41P-201ENST00000473586 105 ntBASIC1.07□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6ATAC14P-201ENST00000516218 91 ntBASIC1.07□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-175P-201ENST00000516896 107 ntBASIC1.07□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 MIR4514-201ENST00000581410 57 ntBASIC1.07□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 AC084368.1-201ENST00000620935 65 ntBASIC1.07□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-247P-201ENST00000362636 107 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 Y_RNA.423-201ENST00000384057 113 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6ATAC11P-201ENST00000408541 125 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 ACA64.5-201ENST00000516207 127 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-758P-201ENST00000516292 89 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 MIR4677-201ENST00000584153 80 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 MIR6835-201ENST00000621552 64 ntBASIC1.06□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNU6-1036P-201ENST00000383959 104 ntBASIC1.05□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 SNORD114-2-201ENST00000363953 78 ntBASIC1.04□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 MIR579-201ENST00000385221 98 ntBASIC1.04□□□□□ -2.24
SENP3-EIF4A1A0A087X0R7 RNA5SP98-201ENST00000363158 137 ntBASIC1.02□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR501-201ENST00000390204 84 ntBASIC1.02□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 AL353803.5-201ENST00000599815 141 ntBASIC1.02□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR518A1-201ENST00000385068 85 ntBASIC1.01□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RPL39P28-201ENST00000465655 155 ntBASIC1.01□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RNU6-1206P-201ENST00000516339 103 ntBASIC1.01□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR5087-201ENST00000635826 76 ntBASIC1.01□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RNU6-351P-201ENST00000516097 100 ntBASIC1□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 U2.18-201ENST00000622185 84 ntBASIC1□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RNU6-598P-201ENST00000364017 105 ntBASIC0.99□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RNU6-995P-201ENST00000391244 107 ntBASIC0.99□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RNU6-1232P-201ENST00000516299 86 ntBASIC0.99□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 RNU7-151P-201ENST00000516930 53 ntBASIC0.99□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR548AL-201ENST00000578416 97 ntBASIC0.99□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 Y_RNA.69-201ENST00000362885 109 ntBASIC0.98□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR608-201ENST00000384820 100 ntBASIC0.98□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR146A-201ENST00000385201 99 ntBASIC0.98□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR760-201ENST00000390220 80 ntBASIC0.98□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.97□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 MIR6755-201ENST00000619993 66 ntBASIC0.97□□□□□ -2.25
SENP3-EIF4A1A0A087X0R7 Y_RNA.185-201ENST00000363894 100 ntBASIC0.96□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 SNORD115-23-201ENST00000364461 82 ntBASIC0.96□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-1008P-201ENST00000384160 104 ntBASIC0.96□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 MIR548AA1-201ENST00000384971 97 ntBASIC0.96□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 SNX3P1X-201ENST00000414887 175 ntBASIC0.96□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-828P-201ENST00000364876 107 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-974P-201ENST00000384099 108 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-110P-201ENST00000384508 104 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 MIR876-201ENST00000401147 81 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 AC108676.2-201ENST00000605225 163 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RN7SL660P-201ENST00000614852 299 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 snoR1.1-201ENST00000628177 80 ntBASIC0.95□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 MIR106A-201ENST00000384870 81 ntBASIC0.94□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-696P-201ENST00000390834 107 ntBASIC0.94□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-863P-201ENST00000515989 104 ntBASIC0.94□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU4-54P-201ENST00000516428 129 ntBASIC0.94□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 U6.103-201ENST00000637085 61 ntBASIC0.94□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNA5SP128-201ENST00000365305 116 ntBASIC0.93□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 RNU6-1262P-201ENST00000516217 96 ntBASIC0.93□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 AP000676.1-201ENST00000533307 52 ntBASIC0.93□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 MIR4432-201ENST00000581823 84 ntBASIC0.93□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 MIR6866-201ENST00000638146 69 ntBASIC0.93□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 AC138207.3-201ENST00000585289 166 ntBASIC0.91□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 AC023932.2-201ENST00000603176 175 ntBASIC0.91□□□□□ -2.26
SENP3-EIF4A1A0A087X0R7 AL451105.1-201ENST00000450005 189 ntBASIC0.9□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 MIR3925-201ENST00000584674 77 ntBASIC0.9□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-822P-201ENST00000362707 106 ntBASIC0.89□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNA5SP499-201ENST00000363982 119 ntBASIC0.89□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 MIR125B1-201ENST00000385236 88 ntBASIC0.89□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 SNORD57-201ENST00000448188 72 ntBASIC0.89□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 SNORD45.2-201ENST00000363552 72 ntBASIC0.88□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-721P-201ENST00000410155 105 ntBASIC0.88□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-1267P-201ENST00000410747 107 ntBASIC0.88□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU7-129P-201ENST00000516128 62 ntBASIC0.88□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 Y_RNA.139-201ENST00000363464 102 ntBASIC0.87□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 SCARNA11.2-201ENST00000517183 154 ntBASIC0.87□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 MIR499B-201ENST00000636498 73 ntBASIC0.87□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-1204P-201ENST00000363948 107 ntBASIC0.86□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-742P-201ENST00000365289 107 ntBASIC0.86□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 SNORA62.4-201ENST00000365504 151 ntBASIC0.86□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 MIR29B1-201ENST00000385015 81 ntBASIC0.86□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 MIR548H4-201ENST00000408689 111 ntBASIC0.86□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 Y_RNA.698-201ENST00000516798 118 ntBASIC0.86□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-945P-201ENST00000383947 107 ntBASIC0.85□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.84□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU6-59P-201ENST00000384787 107 ntBASIC0.84□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 RNU7-88P-201ENST00000458752 63 ntBASIC0.84□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 U7.5-201ENST00000517224 61 ntBASIC0.84□□□□□ -2.27
SENP3-EIF4A1A0A087X0R7 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 RNU6-1133P-201ENST00000410963 100 ntBASIC0.83□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 SNORD63.1-201ENST00000516178 80 ntBASIC0.83□□□□□ -2.28
SENP3-EIF4A1A0A087X0R7 AL391099.1-201ENST00000624635 187 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 199.5 ms